Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   PF976_RS20015 Genome accession   NZ_CP116011
Coordinates   3866161..3867273 (+) Length   370 a.a.
NCBI ID   WP_013350724.1    Uniprot ID   A0AAE2NV61
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3861161..3872273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS19990 (PF976_19990) rnpA 3861869..3862219 (-) 351 WP_013354275.1 ribonuclease P protein component -
  PF976_RS19995 (PF976_19995) rpmH 3862372..3862506 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  PF976_RS20000 (PF976_20000) dnaA 3863128..3864468 (+) 1341 WP_013350722.1 chromosomal replication initiator protein DnaA -
  PF976_RS20005 (PF976_20005) dnaN 3864654..3865790 (+) 1137 WP_014469588.1 DNA polymerase III subunit beta -
  PF976_RS20010 (PF976_20010) rlbA 3865930..3866145 (+) 216 WP_004392910.1 ribosome maturation protein RlbA -
  PF976_RS20015 (PF976_20015) recF 3866161..3867273 (+) 1113 WP_013350724.1 DNA replication/repair protein RecF Machinery gene
  PF976_RS20020 (PF976_20020) remB 3867291..3867536 (+) 246 WP_004392908.1 extracellular matrix regulator RemB -
  PF976_RS20025 (PF976_20025) gyrB 3867593..3869509 (+) 1917 WP_014469589.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  PF976_RS20030 (PF976_20030) gyrA 3869726..3872185 (+) 2460 WP_013350726.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42414.36 Da        Isoelectric Point: 7.0883

>NTDB_id=775070 PF976_RS20015 WP_013350724.1 3866161..3867273(+) (recF) [Bacillus amyloliquefaciens strain SRCM124317]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=775070 PF976_RS20015 WP_013350724.1 3866161..3867273(+) (recF) [Bacillus amyloliquefaciens strain SRCM124317]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTTCTTTCGATGGCAAAATCGCACCGCA
CCTCAAATGATAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTGGTCATCTCCAAAAAAGGTAAAAAGGGCAAAGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCCGAGGACTTAAATCTCGTTAAAGGCAGCCCTCAGGTGAGGAGGAGAT
TTCTTGATATGGAGATCGGGCAGGTATCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCCCAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCGAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCACAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAGGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGGCCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTAATTCATGAAGAAATCGGAGAATATCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGCCAGTCCCATTTGCTTCATACAATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGTGT
GGATGGCATTGACCACGAAACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.865

100

0.949