Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PIB26_RS13840 Genome accession   NZ_CP115968
Coordinates   2838386..2839015 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain B-DidR     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2833386..2844015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB26_RS13825 helD 2833628..2835682 (-) 2055 WP_001295354.1 DNA helicase IV -
  PIB26_RS13830 yccF 2835805..2836251 (+) 447 WP_001261235.1 YccF domain-containing protein -
  PIB26_RS13835 yccS 2836261..2838423 (+) 2163 WP_000875061.1 YccS family putative transporter -
  PIB26_RS13840 sxy/tfoX 2838386..2839015 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PIB26_RS13845 sulA 2839234..2839743 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PIB26_RS13850 ompA 2840100..2841140 (+) 1041 WP_000750416.1 porin OmpA -
  PIB26_RS13855 matP 2841216..2841668 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PIB26_RS13860 ycbZ 2841854..2843614 (+) 1761 WP_000156531.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=774697 PIB26_RS13840 WP_000839153.1 2838386..2839015(-) (sxy/tfoX) [Escherichia coli strain B-DidR]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=774697 PIB26_RS13840 WP_000839153.1 2838386..2839015(-) (sxy/tfoX) [Escherichia coli strain B-DidR]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1