Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   PG915_RS02405 Genome accession   NZ_CP115920
Coordinates   533287..533919 (-) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio chaetopteri strain CB1-14     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 528287..538919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG915_RS02385 (PG915_02380) - 528362..529573 (+) 1212 WP_353497725.1 aspartate aminotransferase family protein -
  PG915_RS02390 (PG915_02385) astA 529655..530674 (+) 1020 WP_353497726.1 arginine N-succinyltransferase -
  PG915_RS02395 (PG915_02390) astD 530752..532218 (+) 1467 WP_353497727.1 succinylglutamate-semialdehyde dehydrogenase -
  PG915_RS02400 (PG915_02395) - 532229..533020 (+) 792 WP_353497728.1 DUF1338 domain-containing protein -
  PG915_RS02405 (PG915_02400) crp 533287..533919 (-) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  PG915_RS02410 (PG915_02405) - 534162..535031 (-) 870 WP_353497729.1 phosphoribulokinase -
  PG915_RS02415 (PG915_02410) - 535159..535371 (-) 213 WP_353497730.1 YheU family protein -
  PG915_RS02420 (PG915_02415) - 535445..536422 (-) 978 WP_353497731.1 hydrolase -
  PG915_RS02425 (PG915_02420) - 536419..537807 (-) 1389 WP_353497732.1 PLP-dependent aminotransferase family protein -
  PG915_RS02430 (PG915_02425) - 537936..538532 (+) 597 WP_353497733.1 LysE family translocator -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=774440 PG915_RS02405 WP_004410522.1 533287..533919(-) (crp) [Vibrio chaetopteri strain CB1-14]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=774440 PG915_RS02405 WP_004410522.1 533287..533919(-) (crp) [Vibrio chaetopteri strain CB1-14]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACGTTAGAGTGGTTCCTTTCACACTGCCACATTCACAAGTACCCATCAAA
GAGCACGCTTATTCATGCGGGCGAGAAAGCAGAAACGCTTTACTACATCGTCAAAGGCTCTGTAGCGGTACTGATTAAAG
ATGAAGAAGGCAAAGAGATGATCTTGTCTTACCTAAACCAAGGTGACTTCATCGGTGAACTTGGCTTGTTCGAAGAGGAC
CAAGAACGTACGGCATGGGTACGAGCAAAATCACCTTGTGAAGTTGCGGAAATCTCATTCAAGAAGTTCCGTCAGCTTAT
CCAAGTTAACCCAGACATTCTAATGCGCTTATCTGCTCAGATGGCAAGTCGTCTACAAGTGACTAGCCAAAAAGTAGGTG
ACCTAGCATTCCTAGACGTAACGGGTCGTATTGCACAGACGCTACTTAACCTAGCGAAACAACCTGATGCAATGACTCAT
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAAATCGTTGGTTGTTCTCGCGAAACAGTAGGTCGTAT
TCTTAAGATGCTAGAAGAGCAGAACCTAATTTCTGCCCACGGTAAGACAATCGTGGTTTACGGTACTCGCTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467