Detailed information NTG0774440

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QUR98_RS05845
• Genome accession: NZ_CP128578
• Coordinates: 1226245..1227237 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain VG38-53E1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1221245..1232237

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUR98_RS05815 (QUR98_05815)	ispD	1221306..1222016 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QUR98_RS05820 (QUR98_05820)	ispF	1222016..1222495 (+)	480	WP_001219238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QUR98_RS05825 (QUR98_05825)	truD	1222492..1223541 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
QUR98_RS05830 (QUR98_05830)	surE	1223522..1224283 (+)	762	WP_001350156.1	5'/3'-nucleotidase SurE	-
QUR98_RS05835 (QUR98_05835)	pcm	1224277..1224903 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QUR98_RS05840 (QUR98_05840)	nlpD	1225088..1226182 (+)	1095	WP_306217602.1	murein hydrolase activator NlpD	-
QUR98_RS05845 (QUR98_05845)	rpoS	1226245..1227237 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QUR98_RS05850 (QUR98_05850)	-	1227408..1227959 (-)	552	WP_001179443.1	flavodoxin family protein	-
QUR98_RS05855 (QUR98_05855)	-	1228184..1229227 (+)	1044	WP_001161577.1	MBL fold metallo-hydrolase	-
QUR98_RS05860 (QUR98_05860)	ygbN	1229370..1230734 (-)	1365	WP_000104433.1	GntP family transporter	-
QUR98_RS05865 (QUR98_05865)	ygbM	1230823..1231599 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=774440 QUR98_RS05845 WP_000081550.1 1226245..1227237(+) (rpoS) [Escherichia coli strain VG38-53E1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=774440 QUR98_RS05845 WP_000081550.1 1226245..1227237(+) (rpoS) [Escherichia coli strain VG38-53E1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715