Detailed information    

insolico Bioinformatically predicted

Overview


Name   recG   Type   Machinery gene
Locus tag   QTN45_RS11590 Genome accession   NZ_CP128500
Coordinates   2281122..2283170 (-) Length   682 a.a.
NCBI ID   WP_013352228.1    Uniprot ID   A0A9P1JH06
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2276122..2288170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS11560 (QTN45_11560) rncS 2276526..2277275 (-) 750 WP_013352233.1 ribonuclease III -
  QTN45_RS11565 (QTN45_11565) acpP 2277414..2277647 (-) 234 WP_003154310.1 acyl carrier protein -
  QTN45_RS11570 (QTN45_11570) fabG 2277732..2278472 (-) 741 WP_013352232.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  QTN45_RS11575 (QTN45_11575) fabD 2278465..2279418 (-) 954 WP_289412317.1 ACP S-malonyltransferase -
  QTN45_RS11580 (QTN45_11580) plsX 2279437..2280435 (-) 999 WP_013352230.1 phosphate acyltransferase PlsX -
  QTN45_RS11585 (QTN45_11585) fapR 2280449..2281015 (-) 567 WP_013352229.1 transcription factor FapR -
  QTN45_RS11590 (QTN45_11590) recG 2281122..2283170 (-) 2049 WP_013352228.1 ATP-dependent DNA helicase RecG Machinery gene
  QTN45_RS11595 (QTN45_11595) sdaAA 2283148..2284050 (-) 903 WP_013352227.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  QTN45_RS11600 (QTN45_11600) sdaAB 2284071..2284733 (-) 663 WP_013352226.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  QTN45_RS11605 (QTN45_11605) - 2284876..2286543 (-) 1668 WP_013352225.1 DAK2 domain-containing protein -
  QTN45_RS11610 (QTN45_11610) - 2286559..2286921 (-) 363 WP_013352224.1 Asp23/Gls24 family envelope stress response protein -
  QTN45_RS11615 (QTN45_11615) rpmB 2287181..2287369 (+) 189 WP_003154328.1 50S ribosomal protein L28 -
  QTN45_RS11620 (QTN45_11620) spoVM 2287446..2287526 (-) 81 WP_003154329.1 stage V sporulation protein SpoVM -

Sequence


Protein


Download         Length: 682 a.a.        Molecular weight: 77907.35 Da        Isoelectric Point: 6.9229

>NTDB_id=773905 QTN45_RS11590 WP_013352228.1 2281122..2283170(-) (recG) [Bacillus amyloliquefaciens strain SRCM123364]
MKHHQQTSIAEIKGIGPETEKTLQELGIYDISDLLNYFPYRYDDYELRDLEEVKHEERVTVEGKVHSEPSLTYYGKKRNR
LTFRVLVGNYLITAVCFNRPYLKKKLTLGSVVTISGKWDKHRQTISVQELKNGPHQEDKSIEPVYSVKENVTVKMMRRFI
KEALKHHLDNIADPLPEKLRISYKLPDYKQALQTMHQPETRESLQQARRRFVYEEFLLFQLKMQAFRKAEREQSKGISHV
FPAEKLAAFTASLPFSLTNAQMRVLREITADLTSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ
HADSLVSLFANEDVNIALLTSSVKGKRRRELLERLALGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVDQRKKLRN
KGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKQIETYWVKHDMLERILAFIEKELKQGRQAYIICPLIEESD
KLDVQNAIDVYNMLSEVYRGKWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADRFGLS
QLHQLRGRVGRGDHQSFCILMADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARQDAANLVSSEAFWKDDEYRMLRAQLLSSGVLEGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=773905 QTN45_RS11590 WP_013352228.1 2281122..2283170(-) (recG) [Bacillus amyloliquefaciens strain SRCM123364]
GTGAAACACCATCAGCAAACTAGTATAGCGGAGATTAAGGGCATTGGGCCGGAAACAGAAAAAACATTGCAAGAATTGGG
TATCTATGACATTTCTGATCTTCTGAATTATTTCCCTTACCGTTATGATGACTATGAGCTGAGGGATTTGGAAGAAGTTA
AACATGAAGAAAGAGTTACAGTAGAAGGGAAGGTTCATTCAGAACCTTCTCTTACCTATTACGGCAAAAAACGAAACAGG
CTGACATTCAGGGTGCTTGTCGGCAATTATTTAATTACCGCGGTCTGCTTTAACCGTCCGTACTTAAAAAAGAAACTGAC
GCTCGGTTCTGTCGTCACGATATCCGGGAAATGGGATAAACACAGGCAGACCATTTCTGTGCAGGAATTAAAAAACGGGC
CTCATCAAGAAGATAAAAGCATTGAGCCTGTTTATTCCGTTAAAGAAAACGTCACCGTTAAAATGATGAGGCGGTTTATT
AAGGAAGCTTTGAAGCACCATTTGGACAATATTGCCGATCCGCTTCCTGAAAAATTGAGAATCAGTTACAAGCTGCCTGA
TTACAAACAAGCCCTGCAGACGATGCACCAGCCGGAAACGAGGGAATCGTTACAGCAGGCAAGACGCAGGTTTGTTTACG
AAGAATTCTTATTATTTCAGCTGAAAATGCAGGCGTTCCGTAAAGCGGAAAGAGAACAGTCAAAAGGCATCAGCCATGTG
TTTCCGGCTGAAAAGCTCGCCGCTTTTACAGCCAGCCTTCCGTTTTCGCTCACGAACGCACAGATGCGCGTGCTCCGTGA
AATTACCGCTGATTTGACATCTCCTTACCGTATGAACCGTCTGCTGCAAGGCGATGTCGGGTCAGGGAAAACGGCCGTCG
CCGCCATCGCTTTGTACGCTGCGATCCTGTCGGGGTATCAGGGGGCTTTAATGGTGCCGACTGAAATTCTGGCCGAACAG
CATGCCGACTCTCTCGTATCGTTATTTGCAAATGAAGATGTGAACATCGCGCTTTTGACGAGTTCTGTTAAAGGAAAGCG
GCGCAGAGAGCTTTTGGAGCGGCTTGCTCTCGGAGAAATTGATATTTTAGTAGGGACCCATGCTTTAATCCAGGATGAAG
TGGAATTTAAAGCGCTGAGCCTTGTCATTACGGACGAGCAGCATCGGTTCGGGGTCGACCAGCGCAAAAAACTCAGGAAT
AAAGGCCAGGACCCGGATGTGCTGTTTATGACAGCCACCCCGATACCGAGAACATTAGCCATTACCGTCTTCGGAGAAAT
GGATGTTTCCGTTATAGATGAAATGCCCGCGGGACGAAAACAAATCGAAACGTATTGGGTGAAACACGACATGCTGGAGC
GGATTTTGGCTTTTATTGAAAAAGAGCTGAAGCAGGGAAGGCAGGCCTATATTATCTGCCCGCTCATTGAAGAGTCGGAT
AAGCTGGATGTTCAGAATGCGATTGACGTATATAACATGCTGTCTGAGGTTTACCGCGGCAAATGGAATGTCGGTCTGAT
GCACGGGAAGCTCCATTCTGATGAAAAAGATCAGGTGATGAGAGAATTCAGCGCCAATCAATGTCAGGTTCTTGTGTCAA
CAACTGTCGTAGAAGTCGGGGTGAACGTGCCGAATGCGACGATTATGGTCATCTATGACGCCGACCGTTTCGGGCTGTCT
CAGCTCCATCAGCTCCGCGGCCGGGTCGGACGGGGAGACCATCAGTCTTTCTGCATCTTGATGGCCGATCCGAAATCCGA
AACCGGGAAAGAACGGATGAGAATCATGTCGGAGACAAACGACGGCTTTGAACTGTCTGAAAAGGACCTTGAGCTGCGCG
GTCCCGGCGATTTCTTCGGGAAAAAACAGAGCGGTATGCCCGAGTTCAAGGTGGCGGATATGGTTCATGACTACAGAGCT
TTGGAAACGGCCCGCCAGGATGCGGCCAATCTGGTGTCATCAGAGGCTTTTTGGAAAGATGACGAGTACCGCATGCTCCG
CGCTCAACTGCTCTCAAGCGGTGTCTTAGAAGGGGAGAAATTAAGCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A9P1JH06

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

90.029

100

0.9

  recG/mmsA Streptococcus pneumoniae R6

49.776

98.387

0.49

  recG/mmsA Streptococcus pneumoniae R36A

49.776

98.387

0.49

  recG Neisseria meningitidis strain C311

38.897

95.748

0.372