Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PAK23_RS07735 Genome accession   NZ_CP115817
Coordinates   1669109..1671322 (+) Length   737 a.a.
NCBI ID   WP_276489295.1    Uniprot ID   -
Organism   Pseudomonas mendocina strain GD22SC3150TT     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1664109..1676322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAK23_RS07710 - 1664349..1664915 (-) 567 WP_276488946.1 PilZ domain-containing protein -
  PAK23_RS07715 - 1665208..1666455 (+) 1248 WP_276488947.1 lipoprotein-releasing ABC transporter permease subunit -
  PAK23_RS07720 lolD 1666460..1667161 (+) 702 WP_197855926.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  PAK23_RS07725 - 1667161..1668405 (+) 1245 WP_181564180.1 lipoprotein-releasing ABC transporter permease subunit -
  PAK23_RS07730 - 1668445..1668972 (-) 528 WP_276488948.1 DUF2062 domain-containing protein -
  PAK23_RS07735 comA 1669109..1671322 (+) 2214 WP_276489295.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PAK23_RS07740 exbB 1671395..1672027 (+) 633 WP_276488949.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PAK23_RS07745 - 1672024..1672452 (+) 429 WP_276488950.1 biopolymer transporter ExbD -
  PAK23_RS07750 lpxK 1672453..1673454 (+) 1002 WP_276488951.1 tetraacyldisaccharide 4'-kinase -
  PAK23_RS07755 - 1673477..1673662 (+) 186 WP_013714804.1 Trm112 family protein -
  PAK23_RS07760 kdsB 1673663..1674427 (+) 765 WP_276488952.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PAK23_RS07765 - 1674427..1674891 (+) 465 WP_276488953.1 low molecular weight protein-tyrosine-phosphatase -
  PAK23_RS07770 murB 1674888..1675907 (+) 1020 WP_276488954.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79966.20 Da        Isoelectric Point: 8.8178

>NTDB_id=773809 PAK23_RS07735 WP_276489295.1 1669109..1671322(+) (comA) [Pseudomonas mendocina strain GD22SC3150TT]
MLALALGLLTLRCLPSLPPGWLLLIAAVAGLALLLSRLYPLGFFLLGLAWACNSAQWALDDRLDSRLDGRTLWLEGRVVG
LPEVSDGVVRFVLEEAHSRRAELPRRLRVAWYGGPAVQGGERWRLAVNLKRPHGLVNPQSFDYEAWLLAQRIGATGTVKS
GKRLAPAAGLGSWRDSLRQQLLAVPAFHREGAIAALVLGDGSGLSTRDWRLLQHTGTVHLMVISGQHIGLLAGFLYGLVA
LLAKLGAWPARWPWLPCACALALGGALLYGLLAGFEVPVRRACVMVALVLLWRLRFRHLGAWWPLLLALIVVLLLEPLAS
LQPGFWLSFSAVAILALVFGGRLGVWGWWRGLTRAQWTMAIGLLPMMLILGLPVSSSGPLANLIAVPWVGLVVVPLALLG
TLLLPVPVLGEGLLWLAGGALHLLFELLGIIADWLPAWLPSVLPLWAWLLAALGALLLLLPAGVPLRLPGIALMLPALLL
PAPHMEEGRADVWVLDVGQGLAVLVRTREHALLYDAGPRFGDFDTGERIVLPSLRALDLRQLDLMLLSHADNDHAGGAAA
IKAGMPVSRVISGEPQRLADELGADTCESGLVWQWNEVVFRLWQWEGAGSGNQLSCVLQIEAAGERLLLTGDIDVQAERA
LIQSDFPLPSQWLLAPHHGSRTSSSQPFIDAVGAQHVLITRSRHNAFGHPHPQVLARYRAAGVLVHDTALDGALHLRLGE
HGAARALRQEPRFWREK

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=773809 PAK23_RS07735 WP_276489295.1 1669109..1671322(+) (comA) [Pseudomonas mendocina strain GD22SC3150TT]
ATGTTGGCGCTGGCCTTGGGCCTGCTCACTTTGCGCTGTCTACCCAGCCTGCCGCCAGGCTGGCTGCTGCTGATCGCCGC
TGTTGCCGGCCTGGCGTTGCTGCTCTCGCGCCTTTATCCACTGGGGTTCTTCTTGCTGGGGCTGGCCTGGGCCTGCAACT
CGGCGCAGTGGGCGCTGGATGATCGCCTCGATTCCCGACTCGATGGCCGCACTTTGTGGCTGGAGGGGCGGGTGGTCGGC
TTGCCCGAGGTATCCGATGGCGTAGTGCGCTTCGTGCTGGAGGAGGCGCACTCTCGTCGTGCCGAGTTGCCGAGAAGGTT
GCGCGTGGCCTGGTATGGCGGGCCGGCGGTGCAGGGCGGCGAGCGTTGGCGTCTGGCGGTCAACCTGAAACGTCCGCACG
GCCTGGTCAATCCGCAGAGCTTCGACTACGAAGCCTGGCTGCTGGCGCAGCGAATCGGCGCCACGGGCACGGTCAAATCC
GGAAAGCGCCTGGCGCCAGCCGCAGGCCTGGGCAGTTGGCGCGACAGTCTGCGCCAGCAGTTGCTGGCCGTGCCGGCTTT
TCACAGAGAGGGCGCCATCGCCGCGCTGGTACTGGGTGACGGTTCGGGTTTGAGTACCCGTGACTGGCGCCTGCTGCAGC
ACACGGGCACGGTGCATCTGATGGTCATATCGGGGCAGCACATCGGGCTGCTGGCCGGTTTTCTCTACGGTCTGGTGGCA
TTGCTGGCGAAGCTCGGCGCGTGGCCGGCGCGCTGGCCATGGTTGCCTTGTGCCTGCGCCCTGGCCCTGGGTGGAGCCTT
GCTCTACGGCTTGCTGGCAGGCTTCGAGGTGCCGGTGCGCAGGGCCTGCGTGATGGTCGCGCTGGTCCTGCTGTGGCGCC
TGCGCTTTCGTCACCTGGGTGCGTGGTGGCCATTGTTGCTGGCCTTGATCGTGGTTCTGCTGCTGGAGCCGCTGGCCTCA
TTGCAGCCGGGCTTCTGGCTGTCGTTTTCGGCGGTGGCGATTCTGGCTCTGGTGTTTGGCGGTCGGCTCGGCGTCTGGGG
TTGGTGGCGCGGTCTGACGCGTGCGCAGTGGACCATGGCCATCGGCCTGTTGCCGATGATGTTGATCCTCGGCCTGCCAG
TCAGCAGCAGCGGCCCGCTGGCCAACCTGATCGCCGTACCCTGGGTCGGCTTGGTAGTGGTGCCCCTGGCCCTGCTGGGC
ACTTTGCTGCTGCCTGTTCCCGTACTGGGTGAGGGACTGTTGTGGCTGGCCGGTGGCGCGTTGCACCTTTTGTTCGAATT
GCTCGGCATCATCGCCGACTGGCTGCCCGCCTGGTTGCCGAGCGTCCTGCCGCTATGGGCCTGGCTACTGGCTGCGCTGG
GGGCGCTGCTGCTTCTGTTGCCAGCCGGGGTACCCCTGCGTCTGCCCGGTATTGCGCTGATGCTGCCCGCCTTGCTGTTG
CCTGCTCCGCATATGGAGGAGGGGCGCGCCGATGTCTGGGTGCTGGATGTAGGTCAGGGGCTGGCAGTGCTGGTGCGCAC
CCGGGAGCACGCCCTGCTGTACGACGCGGGGCCGCGCTTCGGTGACTTCGATACCGGTGAGCGTATCGTCCTGCCGTCGT
TGCGGGCGCTTGACCTGCGGCAGCTCGACCTGATGCTGCTCAGTCATGCAGACAACGATCATGCTGGCGGCGCTGCGGCC
ATCAAGGCCGGGATGCCTGTCTCAAGGGTGATAAGCGGTGAGCCGCAACGACTGGCCGATGAGCTTGGCGCCGACACCTG
CGAGTCGGGGCTAGTATGGCAATGGAACGAGGTGGTCTTCCGGTTGTGGCAGTGGGAGGGCGCCGGTAGCGGCAACCAGC
TGTCCTGCGTTCTGCAGATCGAGGCTGCGGGCGAGCGTCTGCTGTTGACCGGCGATATCGACGTACAGGCCGAGCGGGCG
CTGATTCAGTCCGACTTTCCTTTGCCGTCGCAGTGGCTGCTGGCGCCTCATCACGGCAGTCGCACCTCGTCCAGCCAGCC
CTTCATCGATGCAGTCGGAGCGCAGCATGTGCTGATTACCCGCAGTCGCCACAATGCCTTCGGCCATCCTCATCCGCAGG
TGCTGGCGCGTTATCGGGCAGCAGGCGTGTTGGTCCATGACACGGCGCTTGATGGCGCGCTGCATCTGCGCCTGGGTGAG
CATGGCGCAGCGCGGGCGTTGCGACAGGAACCACGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(196-460)

Metallo-beta-lactamase superfamily (Lactamase_B)

(496-672)

Domain of unknown function (DUF4131) (DUF4131)

(17-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

68.106

97.422

0.664
  comA Ralstonia pseudosolanacearum GMI1000

35.429

100

0.398