Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PAK23_RS07740 Genome accession   NZ_CP115817
Coordinates   1671395..1672027 (+) Length   210 a.a.
NCBI ID   WP_276488949.1    Uniprot ID   -
Organism   Pseudomonas mendocina strain GD22SC3150TT     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1666395..1677027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAK23_RS07720 lolD 1666460..1667161 (+) 702 WP_197855926.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  PAK23_RS07725 - 1667161..1668405 (+) 1245 WP_181564180.1 lipoprotein-releasing ABC transporter permease subunit -
  PAK23_RS07730 - 1668445..1668972 (-) 528 WP_276488948.1 DUF2062 domain-containing protein -
  PAK23_RS07735 comA 1669109..1671322 (+) 2214 WP_276489295.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PAK23_RS07740 exbB 1671395..1672027 (+) 633 WP_276488949.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PAK23_RS07745 - 1672024..1672452 (+) 429 WP_276488950.1 biopolymer transporter ExbD -
  PAK23_RS07750 lpxK 1672453..1673454 (+) 1002 WP_276488951.1 tetraacyldisaccharide 4'-kinase -
  PAK23_RS07755 - 1673477..1673662 (+) 186 WP_013714804.1 Trm112 family protein -
  PAK23_RS07760 kdsB 1673663..1674427 (+) 765 WP_276488952.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PAK23_RS07765 - 1674427..1674891 (+) 465 WP_276488953.1 low molecular weight protein-tyrosine-phosphatase -
  PAK23_RS07770 murB 1674888..1675907 (+) 1020 WP_276488954.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22839.10 Da        Isoelectric Point: 7.8833

>NTDB_id=773810 PAK23_RS07740 WP_276488949.1 1671395..1672027(+) (exbB) [Pseudomonas mendocina strain GD22SC3150TT]
MWELVKAGGWMMLPIILCSIAAAGIVAERLWTLRPARVTPANLLAQVWRWIKDKKLNNQKLKELREDSPLGQILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGAGMANAPMLAGGISKALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEMVQGDRDVDLGEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=773810 PAK23_RS07740 WP_276488949.1 1671395..1672027(+) (exbB) [Pseudomonas mendocina strain GD22SC3150TT]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATTCTCTGTTCCATCGCTGCTGCCGGTATCGTTGC
CGAGCGTCTGTGGACCCTGCGGCCCGCCCGCGTCACCCCGGCCAATCTGCTGGCCCAGGTGTGGCGCTGGATCAAGGACA
AGAAACTCAACAACCAGAAGCTCAAGGAGCTGCGTGAGGATTCGCCGCTGGGGCAGATTCTCGCTGCCGGTCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCCGCGCGCGTGATCCATGATCTGGAGCGTTATCT
CAACGCCCTTGGTACCATCGCCGGCATCGCGCCGCTGCTCGGTCTGCTCGGCACCGTGCTGGGCATGATCGAGATCTTCA
GCTCCTTCATGGGCGCAGGCATGGCCAATGCGCCGATGCTCGCCGGCGGTATCTCCAAGGCCCTGATCACCACCGCAGCC
GGCCTGATGGTGGCGATCCCGGCACTGTTCTTCCATCGCTACCTGCAGCGCCGTGTCGACGAGCTGGTGGTGGGCATGGA
GCAGGAAGCGATCAAACTGGTGGAAATGGTCCAGGGCGATCGCGATGTCGACCTGGGTGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

89.524

100

0.895