Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   QR290_RS00245 Genome accession   NZ_CP128260
Coordinates   46724..48799 (+) Length   691 a.a.
NCBI ID   WP_007954416.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain PH.SM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 41724..53799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR290_RS00220 (QR290_00220) - 42432..43289 (-) 858 WP_115079695.1 SDR family oxidoreductase -
  QR290_RS00225 (QR290_00225) exbB 43478..44431 (+) 954 WP_115079696.1 tonB-system energizer ExbB -
  QR290_RS00230 (QR290_00230) exbD 44438..44866 (+) 429 WP_115079697.1 TonB system transport protein ExbD -
  QR290_RS00235 (QR290_00235) - 44863..45609 (+) 747 WP_115079698.1 energy transducer TonB -
  QR290_RS00240 (QR290_00240) - 45785..46714 (+) 930 WP_007954418.1 hydrogen peroxide-inducible genes activator -
  QR290_RS00245 (QR290_00245) recG 46724..48799 (+) 2076 WP_007954416.1 ATP-dependent DNA helicase RecG Machinery gene
  QR290_RS00250 (QR290_00250) - 48879..50279 (+) 1401 WP_114886341.1 aminoacyl-tRNA deacylase and HDOD domain-containing protein -
  QR290_RS00255 (QR290_00255) - 50417..50674 (+) 258 WP_289204068.1 hypothetical protein -
  QR290_RS00260 (QR290_00260) - 50671..51432 (+) 762 WP_115079702.1 Fic family protein -
  QR290_RS00265 (QR290_00265) - 51469..51852 (-) 384 WP_289205334.1 SCP2 sterol-binding domain-containing protein -
  QR290_RS00270 (QR290_00270) - 52287..52646 (+) 360 WP_289204069.1 DUF6124 family protein -
  QR290_RS00275 (QR290_00275) - 52709..53797 (-) 1089 WP_289204070.1 hypothetical protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 76138.86 Da        Isoelectric Point: 7.1380

>NTDB_id=773391 QR290_RS00245 WP_007954416.1 46724..48799(+) (recG) [Pseudomonas fluorescens strain PH.SM]
MTELSQVSVTALKGVGEAMAEKLAKVGLENLQDVLFHLPLRYQDRTRVVPIGALRPGQDAVVEGTVSGADVVMGRRRSLV
VRLQDGTGGLSLRFYHFSNAQKEGLKRGTRIRCYGEARPGASGLEIYHPEYRAINGDEPPPVDETLTPVYPLTEGLTQAR
LRQLCMQTLTLLKPATLPDWLPTELARDYQLAPLADAIRYLHNPPADADVDELALGHHWAQHRLAFEELLTHQLSQQRLR
ESMRSLRAPAMPKATKLPAKYLANLGFNPTGAQQRVGNEIAYDLSQHEPMLRLIQGDVGAGKTVVAALAALQALEAGYQV
ALMAPTEILAEQHFITFKRWLEPLGIEVAWLAGKLKGKNRVAALEQIASGTPMVVGTHALFQDEVQFKNLALVIIDEQHR
FGVQQRLALRQKGVGGRMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVTDTRRVEVIERVRSACAE
GRQAYWVCTLIEESEELTCQAAETTFEDLTAALGELKVGLIHGRMKPAEKAAVMAEFKAGNLQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVRDAAQALLERWPTHVSPLLDRWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=773391 QR290_RS00245 WP_007954416.1 46724..48799(+) (recG) [Pseudomonas fluorescens strain PH.SM]
ATGACTGAGCTGTCGCAGGTGTCGGTCACCGCACTCAAGGGTGTCGGTGAAGCCATGGCCGAGAAACTGGCCAAGGTCGG
CCTGGAAAACCTCCAGGACGTGCTGTTCCACCTGCCGCTGCGTTATCAGGATCGCACCCGTGTGGTGCCGATCGGCGCAT
TGCGGCCGGGGCAGGACGCCGTGGTCGAGGGCACCGTCAGCGGCGCCGACGTGGTGATGGGCCGGCGTCGCAGCCTCGTC
GTGCGCTTGCAGGACGGCACCGGCGGACTGAGCCTGCGCTTCTACCACTTCAGCAACGCGCAGAAAGAAGGCCTCAAGCG
CGGCACGCGGATTCGCTGCTACGGCGAAGCCCGGCCCGGAGCCTCGGGGCTGGAGATCTACCACCCGGAATACCGCGCCA
TCAACGGTGACGAACCACCGCCAGTGGATGAAACCCTGACCCCGGTCTACCCACTGACCGAAGGCCTGACCCAGGCGCGC
CTGCGTCAGCTGTGCATGCAGACCCTGACCCTGCTCAAGCCGGCCACCCTGCCCGACTGGCTGCCGACCGAACTGGCCCG
CGACTATCAACTGGCGCCGCTGGCCGATGCGATCCGCTACCTGCACAACCCACCCGCCGATGCCGACGTCGACGAACTCG
CCCTCGGTCATCACTGGGCCCAGCATCGCCTCGCTTTCGAAGAACTGCTGACTCACCAGCTATCGCAGCAGCGCCTGCGC
GAAAGCATGCGTTCCCTGCGCGCGCCGGCGATGCCGAAAGCCACCAAGCTGCCGGCGAAATACCTGGCCAACCTCGGTTT
CAATCCGACCGGCGCGCAACAGCGAGTCGGCAACGAAATCGCCTACGACCTCAGCCAGCACGAACCGATGCTGCGGCTGA
TTCAGGGCGACGTCGGCGCGGGCAAAACTGTGGTCGCCGCCCTCGCCGCGCTGCAAGCGCTGGAAGCGGGTTATCAGGTC
GCACTGATGGCGCCGACCGAAATCCTCGCCGAGCAGCACTTCATCACCTTCAAGCGCTGGCTCGAACCGCTGGGCATTGA
AGTGGCGTGGCTGGCCGGCAAGCTCAAGGGCAAGAACCGCGTCGCCGCGCTGGAACAGATCGCCAGCGGCACGCCAATGG
TGGTCGGCACTCACGCGCTGTTCCAGGACGAAGTGCAGTTCAAGAACCTCGCGCTGGTGATCATCGACGAACAGCACCGT
TTCGGCGTGCAGCAACGTCTGGCGCTGCGGCAGAAAGGCGTTGGCGGGCGCATGTGTCCGCATCAATTGATCATGACCGC
CACACCGATTCCGCGGACGCTGGCGATGAGCGCCTACGCCGACCTCGACACTTCGATCCTCGACGAATTGCCGCCCGGCC
GAACCCCGGTCAACACCGTGCTGGTCACCGACACCCGCCGCGTCGAAGTCATCGAGCGGGTGCGCAGCGCCTGCGCCGAA
GGCCGTCAGGCCTATTGGGTGTGCACGCTGATCGAAGAGTCTGAAGAGCTGACCTGCCAGGCCGCCGAAACCACGTTTGA
AGACCTCACCGCCGCCCTTGGCGAGCTGAAGGTCGGGCTGATCCACGGCCGCATGAAACCCGCAGAGAAAGCCGCCGTCA
TGGCCGAATTCAAGGCCGGCAACCTGCAACTGCTGGTCGCCACCACCGTGATCGAAGTCGGCGTCGACGTACCCAACGCC
AGCCTGATGATCATCGAAAACCCCGAGCGCCTCGGTCTCGCGCAACTGCACCAGTTGCGCGGCCGTGTCGGCCGGGGGAG
CGCGGTCAGCCATTGCGTGCTGCTCTACCATCCGCCGCTGTCGCAGATCGGCCGCCAGCGCCTGGGCATCATGCGCGAGA
CCAACGACGGTTTCGTCATCGCCGAAAAAGACCTCGAACTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAGACCGGC
CTGCTGCAATTCAAGGTCGCCGACCTGATGCGCGACGCCGATCTGCTGCCCGCCGTGCGCGATGCCGCCCAGGCCTTGCT
CGAACGCTGGCCCACTCACGTCAGCCCGCTGCTGGACCGATGGCTGCGACACGGGCAGCAATACGGCCAAGTGTGA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(12-170)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)

DEAD/DEAH box helicase (DEAD)

(293-408)

Helicase conserved C-terminal domain (Helicase_C)

(479-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.74

97.829

0.496
  recG Bacillus subtilis subsp. subtilis str. 168

39.673

97.395

0.386
  recG/mmsA Streptococcus pneumoniae R6

39.701

96.961

0.385
  recG/mmsA Streptococcus pneumoniae R36A

39.701

96.961

0.385