Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   OK783_RS10715 Genome accession   NZ_CP115654
Coordinates   2044069..2044500 (-) Length   143 a.a.
NCBI ID   WP_157147418.1    Uniprot ID   A0A0H4ISB8
Organism   Neisseria gonorrhoeae strain FA1090 N-1-60     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2039069..2049500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK783_RS10680 (OK783_10680) pilE 2039776..2040198 (-) 423 WP_157147417.1 pilin Machinery gene
  OK783_RS10685 (OK783_10685) lpxC 2040304..2041227 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  OK783_RS10690 (OK783_10690) - 2041801..2042142 (-) 342 Protein_2044 pilin -
  OK783_RS10695 (OK783_10695) - 2042195..2042545 (-) 351 Protein_2045 pilin -
  OK783_RS10700 (OK783_10700) - 2042585..2042968 (-) 384 Protein_2046 pilin -
  OK783_RS10705 (OK783_10705) - 2043409..2043740 (-) 332 Protein_2047 pilin -
  OK783_RS10710 (OK783_10710) - 2043722..2044087 (-) 366 Protein_2048 pilin -
  OK783_RS10715 (OK783_10715) pilE 2044069..2044500 (-) 432 WP_157147418.1 pilin Machinery gene
  OK783_RS10720 (OK783_10720) - 2044940..2045296 (-) 357 Protein_2050 pilin -
  OK783_RS11600 - 2045337..2045678 (-) 342 Protein_2051 pilin -
  OK783_RS10730 (OK783_10730) - 2045718..2046069 (-) 352 Protein_2052 pilin -
  OK783_RS10735 (OK783_10735) - 2046451..2046800 (-) 350 Protein_2053 pilin -
  OK783_RS10740 (OK783_10740) - 2046782..2047201 (-) 420 Protein_2054 pilin -
  OK783_RS10745 (OK783_10745) - 2047653..2048342 (-) 690 WP_003705080.1 SprT family zinc-dependent metalloprotease -
  OK783_RS10750 (OK783_10750) - 2048339..2049082 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15273.08 Da        Isoelectric Point: 8.2686

>NTDB_id=773296 OK783_RS10715 WP_157147418.1 2044069..2044500(-) (pilE) [Neisseria gonorrhoeae strain FA1090 N-1-60]
MPTDPDSRLRGNDEAILLAEGQKSAVTGYCPNHGIWPKDNTSAGVASSAADIKGKYVQKVEVNNGVVTATMASSNVNKEI
QGKRLSLWAKRENGSVKWFCGQPVTRDDKAKDDVKADGTAGTKIDTKHLPSTCRDESSLPGIT

Nucleotide


Download         Length: 432 bp        

>NTDB_id=773296 OK783_RS10715 WP_157147418.1 2044069..2044500(-) (pilE) [Neisseria gonorrhoeae strain FA1090 N-1-60]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGGGTATTGCCCGAATCACGGCATATGGCCGAAAGACAACACTTCTGCCGGCGTGGCATCCTCCGCCGCCGACATCAAAG
GCAAATATGTTCAGAAAGTTGAAGTCAACAACGGCGTCGTTACCGCCACAATGGCTTCAAGCAACGTAAACAAAGAAATC
CAAGGCAAAAGACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGA
CGACAAAGCCAAAGACGACGTCAAAGCCGACGGCACCGCCGGCACCAAAATCGACACCAAGCACCTGCCGTCAACCTGCC
GCGATGAATCATCGTTGCCGGGTATTACCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H4ISB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

72.662

97.203

0.706
  pilE Neisseria gonorrhoeae MS11

69.065

97.203

0.671