Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   OK783_RS10680 Genome accession   NZ_CP115654
Coordinates   2039776..2040198 (-) Length   140 a.a.
NCBI ID   WP_157147417.1    Uniprot ID   A0A0H4IWJ4
Organism   Neisseria gonorrhoeae strain FA1090 N-1-60     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2034776..2045198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK783_RS10655 (OK783_10655) pilA 2035774..2037039 (+) 1266 WP_010951395.1 signal recognition particle-docking protein FtsY Machinery gene
  OK783_RS10660 (OK783_10660) - 2037124..2037294 (-) 171 WP_164920398.1 hypothetical protein -
  OK783_RS10665 (OK783_10665) - 2037308..2037991 (-) 684 WP_030003519.1 opacity family porin -
  OK783_RS10670 (OK783_10670) pilE 2038466..2038960 (-) 495 WP_157147416.1 pilin Machinery gene
  OK783_RS10680 (OK783_10680) pilE 2039776..2040198 (-) 423 WP_157147417.1 pilin Machinery gene
  OK783_RS10685 (OK783_10685) lpxC 2040304..2041227 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  OK783_RS10690 (OK783_10690) - 2041801..2042142 (-) 342 Protein_2044 pilin -
  OK783_RS10695 (OK783_10695) - 2042195..2042545 (-) 351 Protein_2045 pilin -
  OK783_RS10700 (OK783_10700) - 2042585..2042968 (-) 384 Protein_2046 pilin -
  OK783_RS10705 (OK783_10705) - 2043409..2043740 (-) 332 Protein_2047 pilin -
  OK783_RS10710 (OK783_10710) - 2043722..2044087 (-) 366 Protein_2048 pilin -
  OK783_RS10715 (OK783_10715) pilE 2044069..2044500 (-) 432 WP_157147418.1 pilin Machinery gene

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 14769.36 Da        Isoelectric Point: 6.4594

>NTDB_id=773295 OK783_RS10680 WP_157147417.1 2039776..2040198(-) (pilE) [Neisseria gonorrhoeae strain FA1090 N-1-60]
MPTDPDSRLRGNDEAILLAEGQKSAVAGYCPNHGKWPANNGDAGVASSAEIKGKYVKSVTVANGVVTAEMASSGVNKEIK
GKRLSLWARRQDGSVKWFCGQPVTRNDAADNDDVAKDDAAGNAIETKHLPSTCRDEPTAT

Nucleotide


Download         Length: 423 bp        

>NTDB_id=773295 OK783_RS10680 WP_157147417.1 2039776..2040198(-) (pilE) [Neisseria gonorrhoeae strain FA1090 N-1-60]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGCCAAAAATCAGCCGTTGC
CGGGTATTGCCCGAATCACGGCAAATGGCCCGCAAACAACGGTGATGCCGGCGTGGCATCCTCCGCCGAAATCAAAGGCA
AATATGTTAAAAGCGTTACGGTCGCAAACGGCGTCGTTACCGCCGAAATGGCTTCAAGCGGCGTAAACAAAGAAATCAAA
GGCAAAAGACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCAACGA
CGCCGCCGACAACGACGACGTCGCCAAAGACGACGCCGCCGGCAACGCCATCGAAACCAAGCACCTGCCGTCAACCTGCC
GCGATGAACCAACTGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H4IWJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

67.376

100

0.679
  pilE Neisseria gonorrhoeae MS11

65.942

98.571

0.65