Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   PF553_RS17715 Genome accession   NZ_CP115643
Coordinates   3662679..3663497 (-) Length   272 a.a.
NCBI ID   WP_281717928.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2022CK-00317     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3657679..3668497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF553_RS17700 (PF553_17700) pilE 3657896..3658321 (-) 426 WP_000788339.1 type IV pilin protein Machinery gene
  PF553_RS17705 (PF553_17705) pilY2 3658318..3658800 (-) 483 WP_001046416.1 type IV pilin protein Machinery gene
  PF553_RS17710 (PF553_17710) pilY1 3658813..3662667 (-) 3855 WP_024432273.1 PilC/PilY family type IV pilus protein Machinery gene
  PF553_RS17715 (PF553_17715) pilX 3662679..3663497 (-) 819 WP_281717928.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  PF553_RS17720 (PF553_17720) pilW 3663494..3664495 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  PF553_RS17725 (PF553_17725) pilV 3664496..3665056 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  PF553_RS17730 (PF553_17730) fimU 3665050..3665523 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  PF553_RS17735 (PF553_17735) ispH 3665693..3666643 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PF553_RS17740 (PF553_17740) gmk 3666766..3667395 (+) 630 WP_000015937.1 guanylate kinase -
  PF553_RS17745 (PF553_17745) rpoZ 3667468..3667746 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  PF553_RS17750 (PF553_17750) - 3667785..3667914 (+) 130 Protein_3463 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28846.73 Da        Isoelectric Point: 6.2314

>NTDB_id=773200 PF553_RS17715 WP_281717928.1 3662679..3663497(-) (pilX) [Acinetobacter baumannii strain 2022CK-00317]
MTHLNYKKIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=773200 PF553_RS17715 WP_281717928.1 3662679..3663497(-) (pilX) [Acinetobacter baumannii strain 2022CK-00317]
ATGACCCATTTAAATTATAAAAAAATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989