Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   PF553_RS17730 Genome accession   NZ_CP115643
Coordinates   3665050..3665523 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain 2022CK-00317     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3660050..3670523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF553_RS17715 (PF553_17715) pilX 3662679..3663497 (-) 819 WP_281717928.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  PF553_RS17720 (PF553_17720) pilW 3663494..3664495 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  PF553_RS17725 (PF553_17725) pilV 3664496..3665056 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  PF553_RS17730 (PF553_17730) fimU 3665050..3665523 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  PF553_RS17735 (PF553_17735) ispH 3665693..3666643 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PF553_RS17740 (PF553_17740) gmk 3666766..3667395 (+) 630 WP_000015937.1 guanylate kinase -
  PF553_RS17745 (PF553_17745) rpoZ 3667468..3667746 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  PF553_RS17750 (PF553_17750) - 3667785..3667914 (+) 130 Protein_3463 hypothetical protein -
  PF553_RS17755 (PF553_17755) - 3667954..3670059 (+) 2106 WP_001117589.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=773203 PF553_RS17730 WP_001214065.1 3665050..3665523(-) (fimU) [Acinetobacter baumannii strain 2022CK-00317]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=773203 PF553_RS17730 WP_001214065.1 3665050..3665523(-) (fimU) [Acinetobacter baumannii strain 2022CK-00317]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1