Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   PF553_RS03030 Genome accession   NZ_CP115643
Coordinates   635493..635903 (+) Length   136 a.a.
NCBI ID   WP_002125991.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2022CK-00317     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 630493..640903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF553_RS03015 (PF553_03015) - 631482..633788 (+) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  PF553_RS03020 (PF553_03020) - 633833..634606 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  PF553_RS03025 (PF553_03025) mazG 634718..635524 (+) 807 WP_000359482.1 nucleoside triphosphate pyrophosphohydrolase -
  PF553_RS03030 (PF553_03030) comEA 635493..635903 (+) 411 WP_002125991.1 ComEA family DNA-binding protein Machinery gene
  PF553_RS03035 (PF553_03035) pcnB 636028..637491 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  PF553_RS03040 (PF553_03040) folK 637488..637970 (+) 483 WP_000219220.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  PF553_RS03045 (PF553_03045) panB 638016..638825 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  PF553_RS03050 (PF553_03050) panC 638829..639677 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  PF553_RS03055 (PF553_03055) rapZ 639700..640551 (+) 852 WP_000821671.1 RNase adapter RapZ -
  PF553_RS03060 (PF553_03060) - 640548..640817 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15672.97 Da        Isoelectric Point: 10.4475

>NTDB_id=773180 PF553_RS03030 WP_002125991.1 635493..635903(+) (comEA) [Acinetobacter baumannii strain 2022CK-00317]
MQYSMRFWKNKYFVLIMLCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=773180 PF553_RS03030 WP_002125991.1 635493..635903(+) (comEA) [Acinetobacter baumannii strain 2022CK-00317]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

97.059

100

0.971
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404