Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PF550_RS17080 Genome accession   NZ_CP115641
Coordinates   3564183..3564824 (-) Length   213 a.a.
NCBI ID   WP_000201225.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2022CK-00251     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3559183..3569824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF550_RS17060 (PF550_17060) aroK 3560099..3560668 (-) 570 WP_000643712.1 shikimate kinase AroK -
  PF550_RS17065 (PF550_17065) pilQ 3560680..3562845 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  PF550_RS17070 (PF550_17070) pilP 3562908..3563435 (-) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  PF550_RS17075 (PF550_17075) pilO 3563446..3564186 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  PF550_RS17080 (PF550_17080) pilN 3564183..3564824 (-) 642 WP_000201225.1 PilN domain-containing protein Machinery gene
  PF550_RS17085 (PF550_17085) pilM 3564824..3565882 (-) 1059 WP_031950501.1 pilus assembly protein PilM Machinery gene
  PF550_RS17090 (PF550_17090) ponA 3566044..3568599 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  PF550_RS17095 (PF550_17095) - 3568617..3569441 (-) 825 WP_086223954.1 putative RNA methyltransferase -
  PF550_RS17100 (PF550_17100) - 3569444..3569776 (-) 333 WP_000169604.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23989.33 Da        Isoelectric Point: 5.3968

>NTDB_id=773161 PF550_RS17080 WP_000201225.1 3564183..3564824(-) (pilN) [Acinetobacter baumannii strain 2022CK-00251]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFAIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=773161 PF550_RS17080 WP_000201225.1 3564183..3564824(-) (pilN) [Acinetobacter baumannii strain 2022CK-00251]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTGCGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704