Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   PF550_RS17070 Genome accession   NZ_CP115641
Coordinates   3562908..3563435 (-) Length   175 a.a.
NCBI ID   WP_000695069.1    Uniprot ID   A0A009IQZ1
Organism   Acinetobacter baumannii strain 2022CK-00251     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3557908..3568435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF550_RS17050 (PF550_17050) - 3558097..3558972 (-) 876 WP_000218807.1 hypothetical protein -
  PF550_RS17055 (PF550_17055) aroB 3558988..3560070 (-) 1083 WP_001194249.1 3-dehydroquinate synthase -
  PF550_RS17060 (PF550_17060) aroK 3560099..3560668 (-) 570 WP_000643712.1 shikimate kinase AroK -
  PF550_RS17065 (PF550_17065) pilQ 3560680..3562845 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  PF550_RS17070 (PF550_17070) pilP 3562908..3563435 (-) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  PF550_RS17075 (PF550_17075) pilO 3563446..3564186 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  PF550_RS17080 (PF550_17080) pilN 3564183..3564824 (-) 642 WP_000201225.1 PilN domain-containing protein Machinery gene
  PF550_RS17085 (PF550_17085) pilM 3564824..3565882 (-) 1059 WP_031950501.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19449.66 Da        Isoelectric Point: 8.9898

>NTDB_id=773159 PF550_RS17070 WP_000695069.1 3562908..3563435(-) (pilP) [Acinetobacter baumannii strain 2022CK-00251]
MKIKQITLYVLACTVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=773159 PF550_RS17070 WP_000695069.1 3562908..3563435(-) (pilP) [Acinetobacter baumannii strain 2022CK-00251]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTACTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009IQZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

99.429

100

0.994
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714