Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   PF550_RS17075 Genome accession   NZ_CP115641
Coordinates   3563446..3564186 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain 2022CK-00251     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3558446..3569186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF550_RS17055 (PF550_17055) aroB 3558988..3560070 (-) 1083 WP_001194249.1 3-dehydroquinate synthase -
  PF550_RS17060 (PF550_17060) aroK 3560099..3560668 (-) 570 WP_000643712.1 shikimate kinase AroK -
  PF550_RS17065 (PF550_17065) pilQ 3560680..3562845 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  PF550_RS17070 (PF550_17070) pilP 3562908..3563435 (-) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  PF550_RS17075 (PF550_17075) pilO 3563446..3564186 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  PF550_RS17080 (PF550_17080) pilN 3564183..3564824 (-) 642 WP_000201225.1 PilN domain-containing protein Machinery gene
  PF550_RS17085 (PF550_17085) pilM 3564824..3565882 (-) 1059 WP_031950501.1 pilus assembly protein PilM Machinery gene
  PF550_RS17090 (PF550_17090) ponA 3566044..3568599 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=773160 PF550_RS17075 WP_000076101.1 3563446..3564186(-) (pilO) [Acinetobacter baumannii strain 2022CK-00251]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=773160 PF550_RS17075 WP_000076101.1 3563446..3564186(-) (pilO) [Acinetobacter baumannii strain 2022CK-00251]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683