Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   PF575_RS17075 Genome accession   NZ_CP115639
Coordinates   3555977..3556450 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain 2022CK-00241     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3550977..3561450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF575_RS17060 (PF575_17060) pilX 3553606..3554424 (-) 819 WP_281717928.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  PF575_RS17065 (PF575_17065) pilW 3554421..3555422 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  PF575_RS17070 (PF575_17070) pilV 3555423..3555983 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  PF575_RS17075 (PF575_17075) fimU 3555977..3556450 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  PF575_RS17080 (PF575_17080) ispH 3556620..3557570 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PF575_RS17085 (PF575_17085) gmk 3557693..3558322 (+) 630 WP_000015937.1 guanylate kinase -
  PF575_RS17090 (PF575_17090) rpoZ 3558395..3558673 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  PF575_RS17095 (PF575_17095) - 3558712..3558841 (+) 130 Protein_3332 hypothetical protein -
  PF575_RS17100 (PF575_17100) - 3558881..3560986 (+) 2106 WP_001117589.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=773109 PF575_RS17075 WP_001214065.1 3555977..3556450(-) (fimU) [Acinetobacter baumannii strain 2022CK-00241]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=773109 PF575_RS17075 WP_001214065.1 3555977..3556450(-) (fimU) [Acinetobacter baumannii strain 2022CK-00241]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1