Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   PF575_RS17060 Genome accession   NZ_CP115639
Coordinates   3553606..3554424 (-) Length   272 a.a.
NCBI ID   WP_281717928.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2022CK-00241     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3548606..3559424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF575_RS17045 (PF575_17045) pilE 3548823..3549248 (-) 426 WP_000788339.1 type IV pilin protein Machinery gene
  PF575_RS17050 (PF575_17050) pilY2 3549245..3549727 (-) 483 WP_001046416.1 type IV pilin protein Machinery gene
  PF575_RS17055 (PF575_17055) pilY1 3549740..3553594 (-) 3855 WP_024432273.1 PilC/PilY family type IV pilus protein Machinery gene
  PF575_RS17060 (PF575_17060) pilX 3553606..3554424 (-) 819 WP_281717928.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  PF575_RS17065 (PF575_17065) pilW 3554421..3555422 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  PF575_RS17070 (PF575_17070) pilV 3555423..3555983 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  PF575_RS17075 (PF575_17075) fimU 3555977..3556450 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  PF575_RS17080 (PF575_17080) ispH 3556620..3557570 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PF575_RS17085 (PF575_17085) gmk 3557693..3558322 (+) 630 WP_000015937.1 guanylate kinase -
  PF575_RS17090 (PF575_17090) rpoZ 3558395..3558673 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  PF575_RS17095 (PF575_17095) - 3558712..3558841 (+) 130 Protein_3332 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28846.73 Da        Isoelectric Point: 6.2314

>NTDB_id=773106 PF575_RS17060 WP_281717928.1 3553606..3554424(-) (pilX) [Acinetobacter baumannii strain 2022CK-00241]
MTHLNYKKIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=773106 PF575_RS17060 WP_281717928.1 3553606..3554424(-) (pilX) [Acinetobacter baumannii strain 2022CK-00241]
ATGACCCATTTAAATTATAAAAAAATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989