Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PF575_RS17070 Genome accession   NZ_CP115639
Coordinates   3555423..3555983 (-) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2022CK-00241     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3550423..3560983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF575_RS17060 (PF575_17060) pilX 3553606..3554424 (-) 819 WP_281717928.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  PF575_RS17065 (PF575_17065) pilW 3554421..3555422 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  PF575_RS17070 (PF575_17070) pilV 3555423..3555983 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  PF575_RS17075 (PF575_17075) fimU 3555977..3556450 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  PF575_RS17080 (PF575_17080) ispH 3556620..3557570 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PF575_RS17085 (PF575_17085) gmk 3557693..3558322 (+) 630 WP_000015937.1 guanylate kinase -
  PF575_RS17090 (PF575_17090) rpoZ 3558395..3558673 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  PF575_RS17095 (PF575_17095) - 3558712..3558841 (+) 130 Protein_3332 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=773108 PF575_RS17070 WP_002194578.1 3555423..3555983(-) (pilV) [Acinetobacter baumannii strain 2022CK-00241]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=773108 PF575_RS17070 WP_002194578.1 3555423..3555983(-) (pilV) [Acinetobacter baumannii strain 2022CK-00241]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGTCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414