Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   QRS93_RS08675 Genome accession   NZ_CP127842
Coordinates   1762308..1764323 (-) Length   671 a.a.
NCBI ID   WP_003053832.1    Uniprot ID   A0ABU0A673
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1757308..1769323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRS93_RS08655 (QRS93_08655) - 1758103..1758555 (+) 453 WP_003052566.1 universal stress protein -
  QRS93_RS08660 (QRS93_08660) - 1758718..1760106 (-) 1389 WP_012767516.1 Cof-type HAD-IIB family hydrolase -
  QRS93_RS08665 (QRS93_08665) - 1760179..1761144 (+) 966 WP_003053845.1 asparaginase -
  QRS93_RS08670 (QRS93_08670) - 1761194..1762111 (-) 918 WP_012767517.1 aldo/keto reductase -
  QRS93_RS08675 (QRS93_08675) recG/mmsA 1762308..1764323 (-) 2016 WP_003053832.1 ATP-dependent DNA helicase RecG Machinery gene
  QRS93_RS08680 (QRS93_08680) - 1764424..1765878 (-) 1455 WP_042357985.1 ABC transporter ATP-binding protein -
  QRS93_RS08685 (QRS93_08685) - 1765815..1766495 (-) 681 WP_003060027.1 energy-coupling factor transporter transmembrane component T -
  QRS93_RS08690 (QRS93_08690) - 1766492..1767085 (-) 594 WP_003053895.1 MptD family putative ECF transporter S component -
  QRS93_RS08695 (QRS93_08695) - 1767082..1768752 (-) 1671 WP_015058020.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75190.90 Da        Isoelectric Point: 6.4089

>NTDB_id=772960 QRS93_RS08675 WP_003053832.1 1762308..1764323(-) (recG/mmsA) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37]
MLLTAPIAHLKGLGPKSAEKFQKLGIYQIEDLLLYYPFRYEDFKSKSVLELLDGEKAVITGTLVTPPNVQYYGFKRNRLT
FKIKQGEVVIGVSFFNQPYLQDKLTLGNEVAIFGKWDQKKTALTGMKLLMTVEDDLQPVYHVAQGVSQTALIKAIKAAFD
SGALDELKENIPDSLLEKYRLMPRQEAVYAMHFPKTLTDYKQALRRIKFEELFYFQLRLQVLKQANRSENSGLAIAFDQE
KINHQIAALPFPLTQAQERSLQEILRDMRSGAHMNRLLQGDVGSGKTVIASLAMYAAYTAGLQSALMVPTEILAEQHYDS
LIKLFPNLSIAILTSGMKAPEKRTALAAIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGDNPD
VLMMTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQQLDTVLAWMKTELEQGAQAYVISPLIEESEALDLKN
AVDLEAELKAYFKASARIALMHGKMKADEKEAIMQAFKAQEIDLLVSTTVIEVGVNVPNASIMVIMDADRFGLSQLHQLR
GRVGRGHKQSYAILVANPKTESGKERMAIMTTTNDGFVLAEADLKMRGAGEIFGTRQSGLPEFKTADIVEDYAILEEARK
VATMITSEPHWEQQEEWQMVLNYLDTTADFD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=772960 QRS93_RS08675 WP_003053832.1 1762308..1764323(-) (recG/mmsA) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37]
ATGCTATTAACAGCTCCGATTGCTCACTTAAAAGGCCTAGGACCCAAGTCAGCAGAAAAATTTCAAAAATTAGGTATTTA
TCAGATAGAAGACCTATTGCTCTACTATCCTTTTCGTTATGAAGATTTTAAGAGCAAGTCGGTGTTAGAGCTGTTAGATG
GTGAAAAAGCCGTTATCACAGGAACCCTTGTGACCCCGCCGAATGTACAATATTACGGGTTCAAACGAAACCGGCTGACC
TTTAAAATCAAACAAGGAGAAGTGGTGATAGGGGTTAGTTTTTTCAACCAACCCTATTTACAGGATAAATTAACGCTGGG
CAATGAAGTTGCTATTTTTGGAAAATGGGACCAGAAAAAAACAGCTCTAACAGGTATGAAATTGCTGATGACTGTGGAGG
ATGACTTGCAGCCAGTTTATCATGTAGCTCAGGGAGTCAGTCAAACAGCACTCATTAAAGCCATTAAAGCAGCTTTTGAT
AGTGGTGCTTTAGACGAATTGAAAGAGAATATCCCAGATAGTCTTCTTGAGAAATATCGATTAATGCCAAGGCAAGAAGC
AGTTTATGCCATGCATTTTCCTAAAACCTTGACTGACTATAAGCAGGCGTTGAGGCGTATTAAGTTCGAAGAACTCTTTT
ATTTTCAACTGCGACTGCAGGTCTTGAAACAAGCCAATAGGTCAGAAAACAGTGGATTAGCCATCGCATTTGATCAGGAA
AAGATAAATCATCAAATTGCTGCTCTGCCATTTCCTTTAACTCAAGCGCAGGAACGTAGTTTACAGGAAATTTTGAGGGA
TATGCGTTCAGGTGCCCATATGAATCGGCTGTTGCAAGGGGATGTTGGTTCTGGGAAAACAGTTATTGCTAGCCTTGCCA
TGTATGCGGCTTATACAGCAGGGCTTCAATCGGCACTAATGGTACCCACAGAAATTCTGGCTGAGCAGCATTATGATAGT
CTAATCAAGCTTTTTCCGAACCTCTCTATTGCCATTCTGACGTCAGGTATGAAGGCTCCTGAAAAACGGACGGCTTTAGC
GGCCATTGCAGATGGGTCGGTGGATATGATTGTGGGGACCCACGCGCTCATTCAAGATGCTGTTCAATATCACAAATTAG
GGCTTGTTATCACAGATGAGCAACACCGATTTGGAGTGAAACAACGCCGTATTTTCCGCGAAAAAGGTGATAATCCAGAT
GTGCTCATGATGACGGCAACCCCTATTCCAAGGACATTAGCTATTACAGCTTATGGGGAAATGGATGTTTCTATTATTGA
TGAGTTACCAGCTGGTCGAAAACCTATTGTCACTCGTTGGGTTAAGCACCAACAATTGGACACCGTTTTGGCTTGGATGA
AAACGGAACTGGAGCAAGGGGCACAAGCCTATGTGATTTCGCCTTTGATTGAGGAATCTGAAGCTTTGGACCTTAAAAAT
GCTGTGGATTTGGAAGCTGAATTAAAAGCTTATTTTAAAGCATCAGCCCGTATAGCCCTTATGCATGGTAAGATGAAGGC
AGATGAAAAAGAAGCTATTATGCAGGCTTTCAAGGCTCAAGAGATTGATCTCTTGGTGTCAACAACAGTCATTGAAGTCG
GTGTCAATGTTCCCAACGCTAGTATCATGGTCATCATGGATGCGGACCGTTTTGGACTTAGTCAACTGCATCAGCTACGT
GGCCGTGTCGGACGTGGTCACAAGCAGTCCTATGCGATTCTAGTAGCTAATCCTAAAACAGAATCAGGAAAGGAACGCAT
GGCCATTATGACAACAACCAATGATGGTTTTGTTCTTGCTGAGGCAGATCTCAAAATGAGGGGCGCTGGCGAAATATTTG
GAACCCGCCAATCAGGTCTTCCCGAATTTAAAACCGCAGATATTGTAGAGGACTACGCGATTCTGGAAGAAGCTCGCAAA
GTAGCGACGATGATTACCTCAGAGCCTCACTGGGAGCAACAGGAAGAATGGCAGATGGTGCTGAATTACCTTGACACGAC
GGCAGACTTTGATTAA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-664)

Helicase conserved C-terminal domain (Helicase_C)

(455-566)

DEAD/DEAH box helicase (DEAD)

(254-411)

RecG wedge domain (RecG_wedge)

(6-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

69.001

100

0.69
  recG/mmsA Streptococcus pneumoniae R36A

69.001

100

0.69
  recG Bacillus subtilis subsp. subtilis str. 168

51.756

97.615

0.505
  recG Neisseria meningitidis strain C311

39.726

97.914

0.389