Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   H7R41_RS01600 Genome accession   NZ_AP022238
Coordinates   345999..346817 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain WP8-W18-ESBL-11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340999..351817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R41_RS01565 - 341581..341711 (-) 131 Protein_299 hypothetical protein -
  H7R41_RS01570 (WP8W18E11_03000) rpoZ 341750..342028 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  H7R41_RS01575 (WP8W18E11_03010) gmk 342101..342730 (-) 630 WP_000015937.1 guanylate kinase -
  H7R41_RS01580 (WP8W18E11_03020) ispH 342853..343803 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H7R41_RS01585 (WP8W18E11_03030) fimU 343973..344446 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  H7R41_RS01590 (WP8W18E11_03040) pilV 344440..345000 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  H7R41_RS01595 (WP8W18E11_03050) pilW 345001..346002 (+) 1002 WP_002062195.1 PilW family protein Machinery gene
  H7R41_RS01600 (WP8W18E11_03060) pilX 345999..346817 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H7R41_RS01605 (WP8W18E11_03070) pilY1 346829..350683 (+) 3855 WP_002062153.1 PilC/PilY family type IV pilus protein Machinery gene
  H7R41_RS01610 (WP8W18E11_03080) pilY2 350696..351178 (+) 483 WP_025468267.1 type IV pilin protein Machinery gene
  H7R41_RS01615 (WP8W18E11_03090) pilE 351175..351600 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=77294 H7R41_RS01600 WP_000149374.1 345999..346817(+) (pilX) [Acinetobacter baumannii strain WP8-W18-ESBL-11]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=77294 H7R41_RS01600 WP_000149374.1 345999..346817(+) (pilX) [Acinetobacter baumannii strain WP8-W18-ESBL-11]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment