Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   H7R41_RS01595 Genome accession   NZ_AP022238
Coordinates   345001..346002 (+) Length   333 a.a.
NCBI ID   WP_002062195.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain WP8-W18-ESBL-11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340001..351002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R41_RS01565 - 341581..341711 (-) 131 Protein_299 hypothetical protein -
  H7R41_RS01570 (WP8W18E11_03000) rpoZ 341750..342028 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  H7R41_RS01575 (WP8W18E11_03010) gmk 342101..342730 (-) 630 WP_000015937.1 guanylate kinase -
  H7R41_RS01580 (WP8W18E11_03020) ispH 342853..343803 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H7R41_RS01585 (WP8W18E11_03030) fimU 343973..344446 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  H7R41_RS01590 (WP8W18E11_03040) pilV 344440..345000 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  H7R41_RS01595 (WP8W18E11_03050) pilW 345001..346002 (+) 1002 WP_002062195.1 PilW family protein Machinery gene
  H7R41_RS01600 (WP8W18E11_03060) pilX 345999..346817 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H7R41_RS01605 (WP8W18E11_03070) pilY1 346829..350683 (+) 3855 WP_002062153.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35787.50 Da        Isoelectric Point: 6.1010

>NTDB_id=77293 H7R41_RS01595 WP_002062195.1 345001..346002(+) (pilW) [Acinetobacter baumannii strain WP8-W18-ESBL-11]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNIVNPQL
TDTTPWGGIVLTGSAATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=77293 H7R41_RS01595 WP_002062195.1 345001..346002(+) (pilW) [Acinetobacter baumannii strain WP8-W18-ESBL-11]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTAGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATATTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAGCAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCGCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.399

100

0.994

Multiple sequence alignment