Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   QRO24_RS12310 Genome accession   NZ_CP127829
Coordinates   2580922..2583006 (+) Length   694 a.a.
NCBI ID   WP_409025829.1    Uniprot ID   -
Organism   Gallibacterium anatis strain OH/Ck/12965/20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2575922..2588006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRO24_RS12290 (QRO24_12230) - 2577069..2577698 (+) 630 WP_013745712.1 MarC family protein -
  QRO24_RS12295 (QRO24_12235) gmk 2577782..2578411 (+) 630 WP_039089805.1 guanylate kinase -
  QRO24_RS12300 (QRO24_12240) rpoZ 2578475..2578747 (+) 273 WP_013745710.1 DNA-directed RNA polymerase subunit omega -
  QRO24_RS12305 (QRO24_12245) spoT 2578784..2580922 (+) 2139 WP_409025828.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  QRO24_RS12310 (QRO24_12250) recG 2580922..2583006 (+) 2085 WP_409025829.1 ATP-dependent DNA helicase RecG Machinery gene
  QRO24_RS12315 (QRO24_12255) - 2582999..2583514 (+) 516 WP_409025830.1 chorismate--pyruvate lyase family protein -
  QRO24_RS12320 (QRO24_12260) murI 2583659..2584450 (+) 792 WP_039094433.1 glutamate racemase -
  QRO24_RS12325 (QRO24_12265) - 2584475..2584870 (+) 396 WP_335799726.1 capsular polysaccharide synthesis protein -
  QRO24_RS12330 (QRO24_12270) - 2584861..2585226 (+) 366 WP_155275189.1 hypothetical protein -

Sequence

Protein


Download         Length: 694 a.a.        Molecular weight: 77945.09 Da        Isoelectric Point: 7.4896

>NTDB_id=772880 QRO24_RS12310 WP_409025829.1 2580922..2583006(+) (recG) [Gallibacterium anatis strain OH/Ck/12965/20]
MQAETLLDHLPLTVLSGVGAAMSERLSRLGIRSVQDLLFHFPLRYEDRTHITPIIDLRPDSYATIEGIVQTCEVQFGRRP
MLTVSLSDGSSKIMLRFFNFNAGMKNSFSSGARVKAFGEIRRGRFMAEMHHPEYRIIHHNEPLTLDENLTPIYPSTEGLK
QASWRKLTDQALALLDKATIKELLPTEFNPSGYDLKSAVQFLHRPPAGTLSEMLEKGEHPAQQRLAFEELLAHNLAMQKS
KQDAQQNSAIALRYHSNIKQQFLATLPFTPTKAQLQVVEEIEQDLQRSQPMMRLIQGDVGSGKTLVALLASLVALDNQQQ
VAIMAPTEILAEQHLHNFSHWLEPFGIKVGWLAGKVKGKKRQQSLAQIQCGETQVVIGTHALFQEQVEFHSLALVIIDEQ
HRFGVEQRLLLREKGAKNGLYPHQLIMTATPIPRTLAMTVYADLDVSVIDELPPGRTPIKTVAIAEDRRDELVQRVFHAC
TVDKRQVYWVCTLIDESEVLEAQAAEALAEDLRKALPMLKIGLVHGRMKPQEKQDVMAIFKSGEIDVLVATTVIEVGVDV
PNASLMIIENAERLGLSQLHQLRGRVGRGQIESFCVLLYKAPLGKISRQRLDIMRSSNDGFVIAEKDLEIRGPGEVLGVK
QTGVAEFKVANLVRNRRLLPAVQRCANQLMQINSPNIEQLIHRWLDQKIEYSNA

Nucleotide


Download         Length: 2085 bp        

>NTDB_id=772880 QRO24_RS12310 WP_409025829.1 2580922..2583006(+) (recG) [Gallibacterium anatis strain OH/Ck/12965/20]
ATGCAAGCAGAAACGTTACTTGATCATTTGCCTCTTACTGTTCTTTCCGGTGTTGGTGCGGCAATGTCGGAAAGATTATC
TCGTTTAGGAATCCGTTCCGTTCAAGATCTCTTATTCCATTTTCCATTGCGTTACGAAGATCGCACTCATATTACTCCAA
TTATTGATTTGCGGCCGGATAGTTATGCCACGATCGAGGGCATTGTGCAGACGTGTGAAGTTCAGTTTGGTCGCCGACCG
ATGTTAACGGTTTCCCTTTCTGACGGCTCATCAAAAATTATGTTGCGTTTTTTTAATTTTAATGCCGGGATGAAAAACAG
TTTTTCGAGTGGAGCCAGAGTAAAGGCATTCGGGGAAATTCGACGTGGGCGATTTATGGCAGAAATGCACCATCCGGAAT
ATCGTATTATTCACCATAATGAGCCTTTGACCTTAGATGAAAACCTCACGCCGATTTACCCTTCAACGGAAGGACTAAAA
CAAGCATCTTGGCGAAAATTGACGGATCAAGCATTGGCATTATTGGATAAAGCCACTATTAAAGAGCTGCTCCCCACAGA
ATTTAACCCTAGTGGCTATGATTTGAAAAGTGCAGTGCAGTTTTTACATCGACCGCCGGCGGGTACCCTATCTGAAATGT
TGGAAAAAGGGGAACATCCGGCACAACAGCGTTTAGCATTTGAAGAGCTGTTGGCACATAACTTAGCAATGCAAAAAAGT
AAGCAAGATGCACAACAGAACTCAGCGATTGCATTACGTTATCATAGCAATATCAAGCAACAATTCTTGGCAACGTTGCC
ATTTACCCCAACAAAAGCACAATTACAAGTAGTAGAAGAGATTGAGCAGGATCTGCAACGATCTCAACCGATGATGCGTT
TAATTCAAGGCGATGTTGGTTCCGGAAAAACGTTAGTGGCATTATTGGCTTCTTTAGTGGCGTTGGATAATCAGCAACAG
GTGGCGATTATGGCACCAACGGAAATTCTTGCAGAACAGCATTTGCATAATTTTTCTCATTGGCTGGAACCGTTTGGCAT
TAAGGTCGGTTGGTTGGCAGGTAAGGTAAAAGGCAAAAAACGACAGCAGTCATTGGCACAGATTCAATGTGGTGAAACGC
AAGTGGTTATTGGCACGCACGCTTTATTTCAGGAGCAAGTGGAGTTTCATTCGTTAGCGTTGGTGATCATTGATGAACAG
CACCGTTTCGGCGTTGAACAACGGTTATTATTGCGTGAAAAAGGTGCAAAGAATGGATTGTATCCGCATCAACTGATTAT
GACGGCGACACCAATTCCTCGTACCTTAGCAATGACGGTGTATGCTGATTTGGATGTTTCCGTTATTGATGAGTTACCAC
CCGGCAGAACGCCGATAAAAACTGTAGCGATTGCAGAAGATCGACGAGATGAATTGGTTCAGCGCGTGTTTCACGCTTGT
ACTGTGGATAAACGACAAGTTTATTGGGTTTGTACATTAATTGATGAGTCTGAAGTGTTGGAGGCGCAAGCAGCTGAAGC
ATTGGCGGAGGATTTGCGCAAAGCATTACCAATGCTTAAAATCGGTTTGGTTCACGGCAGAATGAAACCACAGGAAAAAC
AGGATGTAATGGCTATTTTTAAGTCCGGTGAAATTGATGTGTTGGTGGCAACCACTGTCATTGAAGTCGGTGTAGATGTG
CCTAATGCCAGTTTGATGATTATTGAGAATGCGGAAAGACTAGGATTATCTCAACTTCATCAATTACGCGGACGTGTCGG
TCGAGGGCAGATTGAGTCTTTTTGTGTCCTACTTTATAAAGCGCCGTTGGGCAAAATTTCCCGTCAACGATTGGATATTA
TGCGTAGCAGCAATGATGGTTTTGTCATTGCAGAAAAAGATTTAGAAATCAGAGGTCCGGGAGAAGTGTTGGGTGTTAAA
CAGACAGGTGTGGCAGAGTTTAAAGTGGCGAATTTAGTGCGCAACAGGCGTTTACTGCCGGCAGTGCAACGGTGTGCAAA
TCAGTTAATGCAAATAAATTCGCCCAATATAGAGCAATTAATCCATCGCTGGTTGGATCAAAAGATAGAATATTCCAATG
CATAA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(16-172)

DEAD/DEAH box helicase (DEAD)

(272-407)

Helicase conserved C-terminal domain (Helicase_C)

(481-589)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(618-672)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

48.588

96.974

0.471
  recG/mmsA Streptococcus pneumoniae R6

39.764

97.839

0.389
  recG/mmsA Streptococcus pneumoniae R36A

39.764

97.839

0.389
  recG Bacillus subtilis subsp. subtilis str. 168

39.039

95.965

0.375