Detailed information NTG0772857

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: QRO24_RS08545
• Genome accession: NZ_CP127829
• Coordinates: 1781910..1783046 (-)
• Length: 378 a.a.
• NCBI ID: WP_409025601.1
• Uniprot ID: -
• Organism: Gallibacterium anatis strain OH/Ck/12965/20
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1776910..1788046

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QRO24_RS08520 (QRO24_08475)	secM	1778275..1778610 (-)	336	WP_039167974.1	secA translation cis-regulator SecM	-
QRO24_RS08525 (QRO24_08480)	-	1778701..1779042 (+)	342	WP_409025599.1	DciA family protein	-
QRO24_RS08530 (QRO24_08485)	-	1779002..1779901 (-)	900	WP_049804996.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	-
QRO24_RS08535 (QRO24_08490)	aroB	1779905..1780996 (-)	1092	WP_409025600.1	3-dehydroquinate synthase	-
QRO24_RS08540 (QRO24_08495)	aroK	1781030..1781557 (-)	528	WP_013746277.1	shikimate kinase AroK	-
QRO24_RS08545 (QRO24_08500)	comE	1781910..1783046 (-)	1137	WP_409025601.1	type IV pilus secretin PilQ	Machinery gene
QRO24_RS08550 (QRO24_08505)	-	1783046..1783576 (-)	531	WP_409025602.1	hypothetical protein	-
QRO24_RS08555 (QRO24_08510)	-	1783576..1784130 (-)	555	WP_409025603.1	hypothetical protein	-
QRO24_RS08560 (QRO24_08515)	-	1784120..1784938 (-)	819	WP_039093956.1	hypothetical protein	-
QRO24_RS08565 (QRO24_08520)	-	1784995..1787556 (+)	2562	WP_039093954.1	penicillin-binding protein 1A	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 41988.15 Da
• Isoelectric Point: 5.8621

>NTDB_id=772857 QRO24_RS08545 WP_409025601.1 1781910..1783046(-) (comE) [Gallibacterium anatis strain OH/Ck/12965/20]
MKKGVILMVCMMISLSGWSKKVILDPFFTEEANIMPDLIEDKNLIPTDEFEAIAVKYIQVNELYKIFNENGNGLLSGLSG
FSVEPSNNLLLVKGDKQQIQKFKQLISQLDKPGKQIAIEARIVTINNESLNELGVRWGMFSDADNFHKVAAKFDSFGLEN
LSSHLNVNFSTSSEAASIALQVAKIHGRLLDLELKALEQENNVEIIASPHLLTSNQRKASIKQGSEIPYVIEDDTERSSR
THIEFKEAVLGLEVTPQVLHQGVISLDLVVTQNSAGASIPYGAGQVVTIDKQEVQSQVLVRDGETVVLGGIFHDLIGKGE
NKVPLLGDIPGLGKLFSSKSERHQKRELVIFITPRIIHNSQETIENYQKRKQDFMKSL

Nucleotide

• Length: 1137 bp

>NTDB_id=772857 QRO24_RS08545 WP_409025601.1 1781910..1783046(-) (comE) [Gallibacterium anatis strain OH/Ck/12965/20]
ATGAAGAAAGGCGTAATACTGATGGTTTGTATGATGATTTCCTTGAGCGGTTGGAGCAAAAAAGTGATATTAGATCCTTT
TTTTACGGAAGAGGCGAATATAATGCCTGACTTAATAGAGGATAAAAATTTGATTCCGACAGATGAATTTGAAGCAATTG
CTGTGAAATATATACAAGTGAATGAATTGTATAAAATTTTTAATGAAAACGGTAATGGGCTTTTGTCCGGCTTGAGCGGA
TTTAGTGTCGAACCGAGCAACAATTTATTGTTGGTGAAAGGGGATAAGCAACAGATACAAAAATTTAAACAGTTAATTTC
TCAACTGGATAAACCGGGTAAGCAGATTGCCATAGAAGCACGCATAGTGACGATTAATAATGAAAGTTTAAATGAGCTTG
GTGTTCGTTGGGGAATGTTCAGTGATGCGGATAATTTTCACAAAGTGGCAGCTAAATTTGATAGTTTTGGTTTAGAAAAT
TTAAGTTCTCACTTAAATGTTAATTTTTCCACGAGTTCGGAGGCTGCATCTATTGCGTTACAGGTGGCAAAAATTCACGG
GCGGTTGCTGGATTTAGAGTTAAAAGCGTTGGAACAGGAAAATAATGTGGAAATTATTGCCAGTCCACATTTATTGACAT
CTAACCAAAGAAAGGCGTCGATTAAGCAAGGTTCTGAAATTCCTTATGTTATCGAAGATGATACAGAACGCAGCAGCCGT
ACTCATATTGAATTTAAAGAGGCAGTATTGGGTTTGGAAGTGACCCCTCAAGTGCTGCATCAAGGCGTGATCTCACTGGA
TTTGGTGGTAACGCAGAATTCAGCCGGTGCGAGTATTCCTTATGGTGCCGGGCAAGTGGTAACTATTGATAAACAGGAAG
TGCAATCGCAAGTGTTGGTGAGAGATGGAGAAACGGTGGTGTTAGGCGGTATTTTTCACGATCTGATCGGAAAAGGTGAA
AATAAAGTACCGTTGTTGGGGGATATTCCCGGATTAGGTAAGTTATTCAGTAGCAAATCGGAGCGTCATCAGAAGCGTGA
GCTGGTGATTTTTATTACACCAAGAATTATTCATAATTCTCAAGAAACGATAGAAAATTATCAAAAGCGTAAACAGGATT
TTATGAAAAGCCTTTAG

Domains

Predicted by InterProScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (52-115)

• Bacterial type II and III secretion system protein (Secretin) (196-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Haemophilus influenzae 86-028NP	53.438	84.656	0.452
comE	Haemophilus influenzae Rd KW20	53.106	85.185	0.452
comE	Glaesserella parasuis strain SC1401	49.841	83.333	0.415
pilQ	Vibrio campbellii strain DS40M4	42.508	86.508	0.368