Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QRX37_RS20325 Genome accession   NZ_CP127324
Coordinates   4183577..4184167 (-) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain 980-2     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4178577..4189167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRX37_RS20310 (QRX37_20280) uhpT 4179217..4180608 (-) 1392 WP_000879199.1 hexose-6-phosphate:phosphate antiporter -
  QRX37_RS20315 (QRX37_20285) uhpC 4180746..4182065 (-) 1320 WP_000936560.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  QRX37_RS20320 (QRX37_20290) uhpB 4182075..4183577 (-) 1503 WP_075861994.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  QRX37_RS20325 (QRX37_20295) letA 4183577..4184167 (-) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  QRX37_RS20330 (QRX37_20300) - 4184329..4185768 (-) 1440 WP_001361939.1 hypothetical protein -
  QRX37_RS20335 (QRX37_20305) - 4186046..4186528 (-) 483 WP_100792588.1 hypothetical protein -
  QRX37_RS20340 (QRX37_20310) ilvN 4187592..4187882 (-) 291 WP_001181706.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=772338 QRX37_RS20325 WP_000633668.1 4183577..4184167(-) (letA) [Escherichia coli strain 980-2]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=772338 QRX37_RS20325 WP_000633668.1 4183577..4184167(-) (letA) [Escherichia coli strain 980-2]
ATGATCACCGTTGCACTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGTTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCTGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCGGCTTTCTCTCCAAGCGTTGTAGCCCTGACGA
ACTGATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCGCTGACCAAACGCGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGTATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378