Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QRM67_RS01800 Genome accession   NZ_CP127297
Coordinates   381666..382256 (+) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain APEC20/16     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 376666..387256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRM67_RS01770 (QRM67_01770) emrD 377150..378334 (-) 1185 WP_054627011.1 multidrug efflux MFS transporter EmrD -
  QRM67_RS01775 (QRM67_01775) ysdE 378416..378490 (+) 75 WP_211180519.1 protein YsdE -
  QRM67_RS01780 (QRM67_01780) tisB 378753..378842 (-) 90 WP_000060506.1 type I toxin-antitoxin system toxin TisB -
  QRM67_RS01785 (QRM67_01785) ivbL 379406..379504 (+) 99 WP_001315912.1 ilvB operon leader peptide IvbL -
  QRM67_RS01790 (QRM67_01790) ilvB 379610..381297 (+) 1688 Protein_330 acetolactate synthase large subunit -
  QRM67_RS01795 (QRM67_01795) ilvN 381301..381591 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  QRM67_RS01800 (QRM67_01800) letA 381666..382256 (+) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  QRM67_RS01805 (QRM67_01805) uhpB 382256..383758 (+) 1503 WP_001295243.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  QRM67_RS01810 (QRM67_01810) uhpC 383768..385087 (+) 1320 WP_000936565.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  QRM67_RS01815 (QRM67_01815) uhpT 385225..386616 (+) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=771880 QRM67_RS01800 WP_000633668.1 381666..382256(+) (letA) [Escherichia coli strain APEC20/16]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=771880 QRM67_RS01800 WP_000633668.1 381666..382256(+) (letA) [Escherichia coli strain APEC20/16]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAACTGCTAAGCCAGCTGCCGAAAGGTATGGCGACAATAATGCTCTCTGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCACGCGGCTTTCTCTCCAAACGCTGTAGCCCTGACGA
ACTGATTGCGGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GTCAGGACCCGCTAACCAAACGCGAACGGCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCTGCC
GAACTGGGCTTGTCGCCGAAAACGGTGCACGTCCATCGCGCCAACCTGATGGAAAAACTGGGTGTCAGTAACGACGTAGA
GCTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378