Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QMY51_RS16720 Genome accession   NZ_CP127262
Coordinates   3398231..3398887 (-) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain TW10828     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3393231..3403887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY51_RS16680 (QMY51_03279) - 3393741..3394001 (+) 261 WP_000488107.1 ogr/Delta-like zinc finger family protein -
  QMY51_RS16685 (QMY51_03280) - 3394191..3394331 (+) 141 WP_000078920.1 Hok/Gef family protein -
  QMY51_RS16690 - 3394521..3394802 (-) 282 WP_071595684.1 hypothetical protein -
  QMY51_RS16710 (QMY51_03284) pgsA 3395797..3396345 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QMY51_RS16715 (QMY51_03285) uvrC 3396402..3398234 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  QMY51_RS16720 (QMY51_03286) letA 3398231..3398887 (-) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QMY51_RS16725 - 3399029..3399100 (+) 72 Protein_3240 transcriptional regulator -
  QMY51_RS16730 yecU 3399183..3399359 (+) 177 WP_000590347.1 protein YecU -
  QMY51_RS16735 (QMY51_03287) yecF 3399346..3399570 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  QMY51_RS16740 (QMY51_03288) sdiA 3399637..3400359 (-) 723 WP_001154267.1 transcriptional regulator SdiA -
  QMY51_RS16745 (QMY51_03289) tcyN 3400589..3401341 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  QMY51_RS16750 (QMY51_03290) tcyL 3401338..3402006 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  QMY51_RS16755 (QMY51_03291) dcyD 3402021..3403007 (-) 987 WP_001128215.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=771760 QMY51_RS16720 WP_000611335.1 3398231..3398887(-) (letA) [Escherichia coli strain TW10828]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=771760 QMY51_RS16720 WP_000611335.1 3398231..3398887(-) (letA) [Escherichia coli strain TW10828]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486