Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GVV68_RS04255 Genome accession   NZ_CP115307
Coordinates   40485..40769 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus strain BC-01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35485..45769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVV68_RS04220 (GVV68_04220) tmk 35677..36303 (+) 627 WP_000677214.1 dTMP kinase -
  GVV68_RS04225 (GVV68_04225) holB 36339..37322 (+) 984 WP_000169563.1 DNA polymerase III subunit delta' -
  GVV68_RS04230 (GVV68_04230) - 37328..38155 (+) 828 WP_000272429.1 PSP1 domain-containing protein -
  GVV68_RS04235 (GVV68_04235) yabA 38170..38520 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  GVV68_RS04240 (GVV68_04240) - 38603..39343 (+) 741 WP_001055367.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  GVV68_RS04245 (GVV68_04245) - 39330..39620 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  GVV68_RS04250 (GVV68_04250) rsmI 39589..40464 (+) 876 WP_000267821.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  GVV68_RS04255 (GVV68_04255) abrB 40485..40769 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  GVV68_RS04260 (GVV68_04260) metG 41255..43237 (+) 1983 WP_000134134.1 methionine--tRNA ligase -
  GVV68_RS04265 (GVV68_04265) - 43404..44171 (+) 768 WP_000895843.1 TatD family hydrolase -
  GVV68_RS04270 (GVV68_04270) rnmV 44386..44943 (+) 558 WP_000692835.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=771759 GVV68_RS04255 WP_000843036.1 40485..40769(-) (abrB) [Bacillus cereus strain BC-01]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=771759 GVV68_RS04255 WP_000843036.1 40485..40769(-) (abrB) [Bacillus cereus strain BC-01]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851