Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QQ972_RS03840 Genome accession   NZ_CP127255
Coordinates   792818..793408 (-) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain Q5     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 787818..798408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ972_RS03825 (QQ972_03825) uhpT 788458..789849 (-) 1392 WP_097752038.1 hexose-6-phosphate:phosphate antiporter -
  QQ972_RS03830 (QQ972_03830) uhpC 789987..791306 (-) 1320 WP_001350834.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  QQ972_RS03835 (QQ972_03835) uhpB 791316..792818 (-) 1503 WP_001445305.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  QQ972_RS03840 (QQ972_03840) letA 792818..793408 (-) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  QQ972_RS03845 (QQ972_03845) - 793823..794683 (+) 861 WP_001259006.1 DUF6708 domain-containing protein -
  QQ972_RS03850 (QQ972_03850) ilvN 794874..795164 (-) 291 WP_001181706.1 acetolactate synthase small subunit -
  QQ972_RS03855 (QQ972_03855) ilvB 795168..796856 (-) 1689 WP_000168476.1 acetolactate synthase large subunit -
  QQ972_RS03860 (QQ972_03860) ivbL 796962..797060 (-) 99 WP_001312198.1 ilvB operon leader peptide IvbL -
  QQ972_RS03865 (QQ972_03865) ysdE 797305..797379 (-) 75 WP_211180519.1 protein YsdE -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=771643 QQ972_RS03840 WP_000633668.1 792818..793408(-) (letA) [Escherichia coli strain Q5]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=771643 QQ972_RS03840 WP_000633668.1 792818..793408(-) (letA) [Escherichia coli strain Q5]
ATGATCACCGTTGCCCTTATAGACGATCACCTTATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCTGATATCTCCGGTCTGGAGCTTCTAAGCCAGCTGCCGAAAGGCATGGCGACAATTATGCTCTCCGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCGGTTTTCTCTCCAAACGCTGTAGCCCGGATGA
ACTCATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCGCTAACCAAACGCGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCTGCC
GAACTGGGCTTGTCACCGAAAACGGTACATGTCCATCGCGCCAACCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378