Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   H7K70_RS05305 Genome accession   NZ_AP022213
Coordinates   1127245..1128585 (-) Length   446 a.a.
NCBI ID   WP_182851819.1    Uniprot ID   A0A6S5RK88
Organism   Metapseudomonas otitidis strain WP8-S17-CRE-03     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1122245..1133585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7K70_RS05290 (WP8S17C03_10370) - 1122573..1125662 (+) 3090 WP_232104253.1 pilus assembly protein -
  H7K70_RS05295 - 1125671..1126087 (+) 417 WP_182851817.1 type IV pilin protein -
  H7K70_RS05300 (WP8S17C03_10380) thiO 1126138..1127232 (+) 1095 WP_182851818.1 glycine oxidase ThiO -
  H7K70_RS05305 (WP8S17C03_10390) pilR 1127245..1128585 (-) 1341 WP_182851819.1 sigma-54 dependent transcriptional regulator Regulator
  H7K70_RS05310 (WP8S17C03_10400) pilS 1128588..1130183 (-) 1596 WP_182851820.1 PAS domain-containing sensor histidine kinase Regulator
  H7K70_RS05315 (WP8S17C03_10410) - 1130170..1130406 (-) 237 WP_172432732.1 PP0621 family protein -
  H7K70_RS05320 (WP8S17C03_10420) - 1130553..1131551 (-) 999 WP_044410365.1 outer membrane protein assembly factor BamD -
  H7K70_RS05325 (WP8S17C03_10430) rluD 1131699..1132670 (+) 972 WP_044410847.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H7K70_RS05330 (WP8S17C03_10440) pgeF 1132670..1133395 (+) 726 WP_182851821.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50016.31 Da        Isoelectric Point: 6.0001

>NTDB_id=77146 H7K70_RS05305 WP_182851819.1 1127245..1128585(-) (pilR) [Metapseudomonas otitidis strain WP8-S17-CRE-03]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGQELVQYIQQRHPQVPVAM
ITAYGSLDTAINALKAGAFDFLTKPVDLGRLRELVATALRLRSGESDEETSVDSRLLGESPPMRALRNQIQKLARSQAPV
YISGESGSGKELVARLIHEQGPRASHPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAAHGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILSATHKDLAAEVTAGRFRQDLFYRLNVIELGVPPLRERREDIPRLADV
MLKRLAEACSLPAATLTRDALEKLKTYRFPGNVRELENMLERAYTLCENDQIQPHDLRFTEAAGAAEGGEADLAKIDNLE
DYLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=77146 H7K70_RS05305 WP_182851819.1 1127245..1128585(-) (pilR) [Metapseudomonas otitidis strain WP8-S17-CRE-03]
ATGACCCGACAGAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAACTGCTGGAGATCACCCTCGGCCGGATGAA
GCTGGACACCCGCAGTGCCCGCAACGTCAAGGAGGCCCGCGAGTGGCTGGCCCGCGAACCGTTCGACCTCTGCCTCACGG
ACATGCGCCTGCCCGATGGCACCGGGCAGGAGCTGGTGCAGTACATCCAGCAGCGCCATCCCCAGGTGCCGGTGGCCATG
ATCACGGCCTACGGCAGTCTGGACACCGCCATCAATGCCCTCAAGGCCGGTGCCTTCGACTTCCTGACAAAGCCGGTGGA
CCTCGGCCGTCTGCGCGAACTGGTGGCGACTGCCCTGCGGCTGCGCAGCGGCGAATCGGACGAAGAGACCAGCGTCGACA
GCCGCCTGTTGGGCGAATCGCCCCCCATGCGGGCGTTGCGCAACCAGATCCAGAAGCTTGCCCGCAGCCAGGCGCCCGTC
TACATCAGCGGCGAGTCGGGAAGCGGCAAGGAACTGGTCGCACGACTCATCCACGAGCAAGGGCCGCGCGCCAGTCACCC
CTTCGTGCCGGTGAACTGCGGTGCCATTCCGTCGGAGCTGATGGAGAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCA
CCGGCGCCATCGAGGACAAGCAGGGCCTGTTCCAGGCTGCCCACGGTGGCACCCTGTTCCTCGACGAAGTGGCAGACCTG
CCGCTGCCCATGCAGGTCAAGCTGCTGCGGGCCATTCAGGAGAAGGCGGTACGTGCCGTCGGCGGCCAGCAAGAGGTGGT
GGTGGACGTGCGCATCCTCAGTGCCACTCACAAGGACCTGGCTGCCGAGGTGACTGCCGGGCGATTCCGCCAGGACCTGT
TCTACCGGCTCAACGTGATCGAACTGGGGGTGCCACCGTTGCGTGAGCGCCGCGAAGACATTCCCCGCCTGGCGGACGTG
ATGCTCAAGCGCCTGGCCGAAGCCTGCTCGCTGCCGGCCGCGACCCTTACCCGTGATGCGCTGGAGAAGCTCAAGACCTA
CCGCTTCCCCGGGAACGTGCGCGAGCTGGAGAACATGCTCGAGCGGGCCTACACCCTGTGCGAGAACGACCAGATCCAGC
CCCATGACCTGCGCTTCACCGAGGCTGCTGGCGCGGCAGAAGGCGGCGAGGCGGACCTCGCCAAGATCGACAACCTTGAG
GACTACCTCGAGGAGATCGAGCGCAAGCTGATCATGCAGGCCCTGGAAGAGACCCGCTGGAACCGCACGGCAGCAGCCCA
GCGTCTTGGGCTGACCTTCCGTTCCATGCGTTACAGGCTGAAGAAGCTGGGGATCGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(136-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6S5RK88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.341

100

0.883
  pilR Acinetobacter baumannii strain A118

50.327

100

0.518

Multiple sequence alignment