Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   H7K70_RS05310 Genome accession   NZ_AP022213
Coordinates   1128588..1130183 (-) Length   531 a.a.
NCBI ID   WP_182851820.1    Uniprot ID   A0A6S5RGK9
Organism   Metapseudomonas otitidis strain WP8-S17-CRE-03     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1123588..1135183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7K70_RS05295 - 1125671..1126087 (+) 417 WP_182851817.1 type IV pilin protein -
  H7K70_RS05300 (WP8S17C03_10380) thiO 1126138..1127232 (+) 1095 WP_182851818.1 glycine oxidase ThiO -
  H7K70_RS05305 (WP8S17C03_10390) pilR 1127245..1128585 (-) 1341 WP_182851819.1 sigma-54 dependent transcriptional regulator Regulator
  H7K70_RS05310 (WP8S17C03_10400) pilS 1128588..1130183 (-) 1596 WP_182851820.1 PAS domain-containing sensor histidine kinase Regulator
  H7K70_RS05315 (WP8S17C03_10410) - 1130170..1130406 (-) 237 WP_172432732.1 PP0621 family protein -
  H7K70_RS05320 (WP8S17C03_10420) - 1130553..1131551 (-) 999 WP_044410365.1 outer membrane protein assembly factor BamD -
  H7K70_RS05325 (WP8S17C03_10430) rluD 1131699..1132670 (+) 972 WP_044410847.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H7K70_RS05330 (WP8S17C03_10440) pgeF 1132670..1133395 (+) 726 WP_182851821.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 59141.39 Da        Isoelectric Point: 8.3605

>NTDB_id=77147 H7K70_RS05310 WP_182851820.1 1128588..1130183(-) (pilS) [Metapseudomonas otitidis strain WP8-S17-CRE-03]
MASTESPSLASNQIRRIFRLYNLYRLLIGLALVGLISSELDSELLNLARVQLFRNASWFYLLLNILIALMVRRPQHMLQV
FSLALVDVILLSCIFYAAGGSPSGIGNLIIVAVAIANILLRGRIGLLIAAVAAIGMIYLTFYLSLSRPEAANQYVQAGAL
GALCFAGALFVQGISRRLQLSETLAEQRAADVANLEALNALILQRMRTGILVLDSRHRVLLANQAAQAMLGHDGLAGRLL
GPHCPELLKRLEQWWDNPTLRPQSLQPVPDGAVLQPSFVQLQRGEQLDTLVFLEDISQIAQQAQQLKLASLGRLTAGIAH
EIRNPLGAISHAAQLLQESEELEGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQSEPQLLDLKYWLHRFASEFRSASPV
GQTLHLETNPGSIQTRMDPHQLTQVLTNLVQNGLRYSAQKHRQGQVWLKLFRDAESDLPILEVMDDGPGVAEEQLHHLFE
PFHTTENKGTGLGLYISRELCESNQARLDYRPREGGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=77147 H7K70_RS05310 WP_182851820.1 1128588..1130183(-) (pilS) [Metapseudomonas otitidis strain WP8-S17-CRE-03]
GTGGCGAGCACTGAGTCGCCCTCCCTGGCGAGCAATCAGATCCGACGGATCTTCCGCCTTTACAACCTGTATCGCCTGCT
CATCGGCCTGGCGCTGGTCGGGCTGATTTCCAGTGAGCTGGACAGCGAGTTGCTGAACCTGGCCCGTGTCCAGTTGTTCC
GTAATGCCAGCTGGTTCTACCTGCTACTGAACATCCTTATTGCGCTGATGGTGCGCCGCCCCCAGCACATGCTGCAGGTG
TTCAGCCTGGCGCTGGTGGACGTTATTCTGCTGTCCTGCATCTTCTATGCAGCGGGCGGTTCGCCCAGTGGCATCGGCAA
CCTGATCATCGTTGCGGTGGCCATTGCCAACATCCTGCTGCGTGGGCGAATCGGGCTGCTGATCGCCGCCGTCGCTGCCA
TCGGGATGATCTACCTGACCTTCTACCTGAGCTTGTCCCGCCCGGAAGCGGCCAACCAGTACGTACAGGCCGGTGCGCTC
GGTGCCCTGTGCTTTGCAGGCGCCCTGTTCGTGCAGGGCATCAGCCGGCGTCTGCAATTGAGCGAGACCCTGGCCGAGCA
GCGTGCTGCCGACGTGGCCAATCTGGAAGCGCTCAACGCGCTCATCCTACAGCGCATGCGCACGGGCATCCTGGTGCTGG
ACAGCCGCCACCGGGTGTTGCTGGCCAACCAGGCTGCCCAGGCGATGCTGGGGCACGACGGGCTGGCGGGGCGCCTCCTC
GGGCCGCACTGCCCGGAGCTGCTCAAGCGACTGGAGCAGTGGTGGGACAACCCGACCCTCCGCCCCCAGAGCTTGCAGCC
GGTACCCGACGGCGCAGTGCTGCAGCCCAGCTTCGTCCAGCTGCAGCGTGGCGAGCAGCTGGATACGCTGGTCTTCCTCG
AAGACATCTCGCAGATCGCCCAGCAGGCGCAGCAGCTGAAGCTGGCTTCCCTGGGGCGGCTGACCGCCGGTATCGCCCAT
GAGATCCGCAATCCCCTGGGCGCCATCAGTCATGCCGCCCAGCTGTTGCAGGAGTCCGAAGAGCTGGAGGGGCCCGACCG
CCGCCTGGCGCAGATCATCCAGGATCATTCCCGGCGGATGAACCTCGTCATCGAGAACGTCCTGCAACTGTCGCGGCGCC
GCCAGTCGGAACCGCAGTTGCTGGATCTCAAGTACTGGCTGCACCGATTCGCCAGCGAGTTCCGCAGCGCCTCACCGGTG
GGCCAGACCCTTCACCTGGAAACCAACCCGGGCAGCATCCAGACCCGCATGGACCCCCACCAGCTCACACAGGTGCTGAC
CAACCTGGTGCAGAACGGCCTGCGCTACAGCGCGCAGAAGCACCGCCAGGGGCAGGTCTGGCTGAAACTCTTCCGTGACG
CCGAGAGCGACCTGCCCATACTGGAAGTGATGGACGACGGCCCCGGCGTCGCCGAGGAGCAGCTCCATCACCTGTTCGAG
CCCTTCCACACCACGGAGAACAAGGGCACCGGGCTCGGCCTGTACATCTCCCGCGAGCTGTGCGAGAGCAACCAGGCCCG
CCTTGACTATCGACCCCGCGAAGGCGGCGGCAGCTGTTTCCGCATCACCTTCGCCCATCCGCGAAAACTGAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(310-374)

PAS domain (PAS_8)

(203-252)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6S5RGK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.686

98.493

0.667

Multiple sequence alignment