Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PCP57_RS09325 | Genome accession | NZ_CP115287 |
| Coordinates | 2010414..2011286 (-) | Length | 290 a.a. |
| NCBI ID | WP_114232522.1 | Uniprot ID | A0A6A9K2W7 |
| Organism | Pseudomonas aeruginosa strain F006 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2005414..2016286
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PCP57_RS09280 (PCP57_09285) | - | 2006275..2006445 (-) | 171 | WP_003094672.1 | DUF3094 family protein | - |
| PCP57_RS09285 (PCP57_09290) | - | 2006471..2006920 (-) | 450 | WP_033970456.1 | MOSC domain-containing protein | - |
| PCP57_RS09290 (PCP57_09295) | - | 2006917..2007546 (-) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| PCP57_RS09295 (PCP57_09300) | - | 2007679..2008104 (+) | 426 | WP_033976385.1 | GNAT family N-acetyltransferase | - |
| PCP57_RS09300 (PCP57_09305) | - | 2008101..2008571 (+) | 471 | WP_328994901.1 | FAD/FMN-containing dehydrogenase | - |
| PCP57_RS09305 (PCP57_09310) | - | 2008568..2009257 (+) | 690 | WP_031805639.1 | energy-coupling factor ABC transporter permease | - |
| PCP57_RS09310 (PCP57_09315) | - | 2009363..2009572 (+) | 210 | WP_003094660.1 | hypothetical protein | - |
| PCP57_RS09315 (PCP57_09320) | yacG | 2009609..2009809 (-) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| PCP57_RS09320 (PCP57_09325) | coaE | 2009806..2010417 (-) | 612 | WP_033970460.1 | dephospho-CoA kinase | - |
| PCP57_RS09325 (PCP57_09330) | pilD | 2010414..2011286 (-) | 873 | WP_114232522.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PCP57_RS09330 (PCP57_09335) | pilC | 2011287..2012504 (-) | 1218 | WP_003161763.1 | type II secretion system F family protein | Machinery gene |
| PCP57_RS09335 (PCP57_09340) | pilB | 2012508..2014208 (-) | 1701 | WP_328994906.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PCP57_RS09340 (PCP57_09345) | - | 2014439..2014903 (+) | 465 | WP_328994908.1 | pilin | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31829.85 Da Isoelectric Point: 7.7068
>NTDB_id=771343 PCP57_RS09325 WP_114232522.1 2010414..2011286(-) (pilD) [Pseudomonas aeruginosa strain F006]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLVANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLVANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=771343 PCP57_RS09325 WP_114232522.1 2010414..2011286(-) (pilD) [Pseudomonas aeruginosa strain F006]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTTCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGAC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGTGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAGCG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTCTCCGGCTACGTGGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTACTCTGGCTGGGCCTGGTCGCCAATCATTTCGGTCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTTCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGAC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGTGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAGCG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTCTCCGGCTACGTGGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTACTCTGGCTGGGCCTGGTCGCCAATCATTTCGGTCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.714 |
96.552 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.921 |
95.862 |
0.469 |