Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   QQS40_RS10855 Genome accession   NZ_CP127167
Coordinates   2163963..2166044 (-) Length   693 a.a.
NCBI ID   WP_329505270.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain HP01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2158963..2171044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQS40_RS10835 - 2159283..2160518 (-) 1236 WP_049374644.1 four-carbon acid sugar kinase family protein -
  QQS40_RS10840 - 2160515..2161507 (-) 993 WP_049363682.1 2-keto-3-deoxygluconate permease -
  QQS40_RS10845 pdxA 2161533..2162534 (-) 1002 WP_049363685.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA -
  QQS40_RS10850 - 2162546..2163799 (-) 1254 WP_329505268.1 four-carbon acid sugar kinase family protein -
  QQS40_RS10855 recG 2163963..2166044 (-) 2082 WP_329505270.1 ATP-dependent DNA helicase RecG Machinery gene
  QQS40_RS10860 spoT 2166044..2168164 (-) 2121 WP_329505272.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  QQS40_RS10865 rpoZ 2168240..2168506 (-) 267 WP_289901387.1 DNA-directed RNA polymerase subunit omega -
  QQS40_RS10870 gmk 2168567..2169193 (-) 627 WP_329506800.1 guanylate kinase -
  QQS40_RS10875 gap 2169411..2170430 (+) 1020 WP_329505275.1 type I glyceraldehyde-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77967.47 Da        Isoelectric Point: 7.9053

>NTDB_id=771287 QQS40_RS10855 WP_329505270.1 2163963..2166044(-) (recG) [Haemophilus parainfluenzae strain HP01]
MSTQLLDAVPLTTLSGVGAAISDKLSRIGIHNLQDLLFHLPIRYEDRTRITPIADLRPEQYATIEGVVQTCEVAFGRRPI
LTVSLSDGTSKIMLRFFNFNSGMKNSFQIGTRVKAFGEIKRGRFMAEIHHPEYQIIRDNTPLVLEETLTPIYSTTEGLKQ
NSLRKLTDQALALLDKIQLTEILPNEFNPHPFSLKEAIRFLHRPPPDISLDILEKGQHPAQQRLIFEELLAHNLAMQKVR
LGTQQFLALPLHYQTDLKQRFLASLPFQPTNAQNRVVADIEQDLAKDYPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHANNFRRWLEPFSIEVGWLAGKVKGKARQTELEKIKSGAVQMVVGTHALFQEEVEFADLALVIIDEQH
RFGVHQRLMLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEERRDEIVARVKNACI
NEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLKIGLVHGRMKPQEKQDIMAAFKNAELDLLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQ
TGIAEFKVANLMRDRKMIPLIQHYAKRLMRQSPELAESLIKRWLGQREIYTNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=771287 QQS40_RS10855 WP_329505270.1 2163963..2166044(-) (recG) [Haemophilus parainfluenzae strain HP01]
ATGAGCACGCAACTTCTCGATGCCGTTCCTTTAACGACTTTATCTGGTGTAGGTGCGGCAATCTCCGATAAATTAAGCCG
TATTGGAATTCATAATCTCCAAGACTTGCTTTTTCATTTACCCATCCGTTATGAAGATCGCACGAGAATAACACCCATTG
CTGATCTTCGTCCTGAACAATATGCCACCATTGAAGGGGTTGTCCAAACCTGTGAAGTTGCCTTTGGGCGTCGTCCTATT
TTAACCGTCAGTCTTTCTGATGGAACGAGCAAGATTATGCTCCGTTTTTTCAATTTTAATTCGGGGATGAAAAACAGTTT
TCAGATTGGTACGCGCGTCAAAGCGTTTGGTGAAATTAAACGCGGGCGTTTTATGGCAGAAATTCATCATCCTGAATATC
AAATCATACGGGATAATACGCCATTGGTTTTAGAGGAAACGCTCACGCCTATTTATTCCACAACGGAAGGTTTAAAACAA
AATTCATTACGTAAGCTAACCGATCAAGCATTGGCTTTACTCGATAAAATCCAATTAACGGAAATTTTACCTAATGAATT
TAATCCACATCCTTTTAGCCTAAAAGAGGCTATTCGATTTTTGCATCGTCCGCCGCCAGATATCTCATTAGATATTTTGG
AGAAAGGACAACATCCCGCACAGCAACGACTTATCTTTGAAGAGCTTCTTGCACATAATCTTGCGATGCAAAAAGTGCGG
TTGGGTACGCAGCAGTTTTTAGCGTTGCCATTGCATTATCAAACCGATTTGAAGCAACGTTTTCTTGCATCTTTGCCTTT
TCAACCAACGAATGCCCAAAATAGAGTTGTGGCAGATATTGAACAGGATTTAGCGAAAGATTATCCAATGATGCGCCTTG
TTCAAGGGGATGTAGGTTCGGGGAAAACATTAGTGGCCGCCTTAGCTGCCTTATTAGCGATTGATAATGGCAAACAAGTG
GCTTTAATGGCACCAACGGAAATTTTAGCTGAACAGCATGCCAATAATTTCCGTCGTTGGTTAGAGCCTTTTAGTATTGA
AGTAGGCTGGTTAGCGGGTAAGGTGAAAGGGAAAGCTCGCCAAACCGAATTGGAAAAAATTAAGTCCGGTGCGGTACAAA
TGGTGGTGGGCACGCATGCTTTATTCCAAGAAGAAGTAGAATTTGCCGATTTAGCCTTGGTGATTATTGATGAACAACAT
CGTTTTGGTGTGCATCAACGTTTAATGTTGCGAGAAAAAGGCGAAAAAGCAGGATTTTATCCACATCAACTGATTATGAC
AGCAACACCAATCCCAAGAACATTAGCGATGACGGTTTATGCTGATCTTGATACGTCGATTATTGATGAATTGCCACCAG
GTCGAACGCCGATTACGACGGTTGTTATTTCAGAAGAGCGTCGTGATGAAATCGTTGCTCGAGTCAAAAATGCCTGTATT
AATGAAAAGCGTCAGGCTTATTGGGTTTGTACTTTAATTGATGAGTCTGAAGTATTAGAAGCGCAAGCAGCCGAGGCAAT
TTGGGAAGATTTAACGAAAGCCTTGCCGATGCTTAAAATTGGCCTTGTACATGGGAGAATGAAACCGCAAGAAAAACAAG
ATATTATGGCTGCCTTTAAAAATGCAGAACTCGATTTGCTTGTGGCTACAACCGTGATCGAAGTGGGCGTGGATGTGCCG
AATGCCAGTCTAATGATCATTGAAAATGCAGAGCGTTTGGGCTTATCACAACTCCATCAGTTACGTGGACGAGTAGGGCG
TGGCAGTACGGCGTCTTTTTGTGTCTTAATGTATAAACCGCCGTTGGGTAAAGTGTCGCAAAAACGTTTACAGGTATTGC
GTGATAGCCAAGATGGCTTTGTGATTTCGGAAAAAGATTTAGAAATTCGCGGTCCAGGTGAGGTGTTAGGCACCAAACAG
ACAGGAATTGCCGAATTTAAAGTGGCGAATTTAATGCGTGATCGTAAAATGATCCCGCTGATCCAACATTATGCCAAACG
ATTAATGCGGCAGTCTCCCGAACTCGCCGAAAGTCTGATAAAACGCTGGCTCGGTCAGCGGGAAATTTATACTAACGCTT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(292-405)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-677)

Helicase conserved C-terminal domain (Helicase_C)

(481-588)

RecG wedge domain (RecG_wedge)

(15-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.037

97.403

0.478
  recG/mmsA Streptococcus pneumoniae R6

40.52

94.372

0.382
  recG/mmsA Streptococcus pneumoniae R36A

40.52

94.372

0.382
  recG Bacillus subtilis subsp. subtilis str. 168

38.93

97.114

0.378