Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   P4A98_RS27510 Genome accession   NZ_CP127126
Coordinates   5953182..5953805 (-) Length   207 a.a.
NCBI ID   WP_003116135.1    Uniprot ID   A0A0H2ZIF6
Organism   Pseudomonas aeruginosa PA14 strain MA3 isolate DTU_MIE     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5948182..5958805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4A98_RS27490 (P4A98_27490) aroB 5948789..5949895 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  P4A98_RS27495 (P4A98_27495) aroK 5949945..5950463 (-) 519 WP_003095833.1 shikimate kinase AroK -
  P4A98_RS27500 (P4A98_27500) pilQ 5950475..5952607 (-) 2133 WP_003141780.1 type 4a pilus secretin PilQ Machinery gene
  P4A98_RS27505 (P4A98_27505) comL/pilP 5952661..5953185 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  P4A98_RS27510 (P4A98_27510) pilO 5953182..5953805 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  P4A98_RS27515 (P4A98_27515) pilN 5953802..5954398 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  P4A98_RS27520 (P4A98_27520) pilM 5954398..5955462 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  P4A98_RS27525 (P4A98_27525) - 5955647..5958118 (+) 2472 WP_003141786.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22958.35 Da        Isoelectric Point: 4.9107

>NTDB_id=771209 P4A98_RS27510 WP_003116135.1 5953182..5953805(-) (pilO) [Pseudomonas aeruginosa PA14 strain MA3 isolate DTU_MIE]
MSLASSLESLRKIDVNDLDLNNIGSWPAAVKVIVCVLLTAAVLALGYNFHLRDLQTQLEQQAAQEESLKQQFATKAFQAA
NLEAYKAQMKEMEESFGALLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVTQQFYIELPIQISVVGGYHDLATF
VSGVSSLPRIVTLHDFEIKPASPDNTSKLRMSILAKTYRYNDKGLKK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=771209 P4A98_RS27510 WP_003116135.1 5953182..5953805(-) (pilO) [Pseudomonas aeruginosa PA14 strain MA3 isolate DTU_MIE]
ATGAGTCTGGCCAGTTCCCTGGAAAGTCTGCGCAAGATCGACGTAAACGACCTCGATCTGAACAACATCGGTTCCTGGCC
GGCGGCGGTCAAGGTCATCGTCTGCGTGCTGCTGACCGCGGCGGTCCTGGCGCTGGGCTACAACTTCCATCTCCGTGACT
TGCAAACACAGCTCGAACAGCAGGCTGCGCAAGAAGAATCGCTCAAGCAGCAATTTGCTACCAAAGCGTTCCAGGCCGCG
AACCTGGAAGCCTACAAGGCACAGATGAAGGAGATGGAGGAGTCCTTCGGCGCCTTGCTGCGGCAGTTGCCCAGCGACAC
CGAGGTACCCGGGCTGCTCGAGGACATCACTCGTACCGGTCTGGGCAGCGGCCTGGAGTTCGAGGAGATCAAGCTGCTCC
CTGAAGTCACTCAGCAGTTCTATATCGAGCTGCCGATCCAGATCAGCGTGGTCGGCGGCTACCACGACCTGGCGACCTTC
GTCAGCGGCGTGTCCAGCCTGCCGCGGATCGTTACCCTGCATGACTTCGAGATCAAGCCGGCTTCGCCCGATAACACCTC
GAAGCTGCGCATGAGCATCTTGGCCAAGACCTACCGCTACAACGACAAGGGGCTGAAGAAATGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(58-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIF6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Legionella pneumophila strain ERS1305867

45.596

93.237

0.425
  pilO Acinetobacter baumannii D1279779

45.789

91.787

0.42
  comO/pilO Acinetobacter baylyi ADP1

43.617

90.821

0.396