Detailed information NTG0077091

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H7K60_RS02200
• Genome accession: NZ_AP022206
• Coordinates: 475087..475959 (-)
• Length: 290 a.a.
• NCBI ID: WP_065475375.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain WP7-S18-ESBL-06
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 470087..480959

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7K60_RS02175 (WP7S18E06_04170)	-	471823..473007 (+)	1185	WP_073351955.1	tetratricopeptide repeat protein	-
H7K60_RS02180 (WP7S18E06_04180)	mutT	473016..473429 (+)	414	WP_174892455.1	8-oxo-dGTP diphosphatase MutT	-
H7K60_RS02185 (WP7S18E06_04190)	yacG	473490..473684 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
H7K60_RS02190 (WP7S18E06_04200)	zapD	473694..474416 (-)	723	WP_043160635.1	cell division protein ZapD	-
H7K60_RS02195 (WP7S18E06_04210)	coaE	474454..475068 (-)	615	WP_073351951.1	dephospho-CoA kinase	-
H7K60_RS02200 (WP7S18E06_04220)	pilD	475087..475959 (-)	873	WP_065475375.1	prepilin peptidase	Machinery gene
H7K60_RS02205 (WP7S18E06_04230)	pilC	475982..477223 (-)	1242	WP_011707570.1	type II secretion system F family protein	Machinery gene
H7K60_RS02210 (WP7S18E06_04240)	pilB	477339..479045 (-)	1707	WP_073351950.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
H7K60_RS02215	tapA	479049..479492 (-)	444	WP_073352603.1	type IVa pilus major pilin TapA	-
H7K60_RS02220 (WP7S18E06_04250)	nadC	479815..480672 (-)	858	WP_073351948.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32484.77 Da
• Isoelectric Point: 6.7410

>NTDB_id=77091 H7K60_RS02200 WP_065475375.1 475087..475959(-) (pilD) [Aeromonas hydrophila strain WP7-S18-ESBL-06]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLTGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=77091 H7K60_RS02200 WP_065475375.1 475087..475959(-) (pilD) [Aeromonas hydrophila strain WP7-S18-ESBL-06]
ATGTTGCTAATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCACCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCAGAGACACAGCCGCAGCAGGAAGAGCGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCTCATTGCGGCCACGCC
ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC
GGCCCGTTATCCTCTGGTGGAATTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTCGCACCGGGCTGGGGCT
TGCTGGCCGCCCTGTTGCTCACCTGGGTACTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCACTGCTGTGGGGTGGCCTGTTGTTCAATCTGACAGGGGGATTTGCGCCGCTGGCCGATGCGGTGATCGG
CGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGTTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG
GTTGGTGCTTTCATCGGAATTGGCCTCATTCTGCTGCGCAACCATCATCAGAATAAACCCATCCCCTTCGGCCCCTATCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.324	98.966	0.607
pilD	Vibrio campbellii strain DS40M4	55.749	98.966	0.552
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459