Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   QQX47_RS28135 Genome accession   NZ_CP127122
Coordinates   6039304..6041379 (+) Length   691 a.a.
NCBI ID   WP_180361212.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Ned_5_BIM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6034304..6046379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQX47_RS28105 (QQX47_28100) - 6034726..6035106 (+) 381 WP_003096609.1 RidA family protein -
  QQX47_RS28110 (QQX47_28105) - 6035161..6035892 (+) 732 WP_003096611.1 hypothetical protein -
  QQX47_RS28115 (QQX47_28110) - 6035899..6036519 (-) 621 WP_023103599.1 LysE family translocator -
  QQX47_RS28120 (QQX47_28115) - 6036586..6037386 (-) 801 WP_003098321.1 AraC family transcriptional regulator -
  QQX47_RS28125 (QQX47_28120) - 6037386..6038237 (-) 852 WP_003096618.1 SDR family oxidoreductase -
  QQX47_RS28130 (QQX47_28125) oxyR 6038375..6039307 (+) 933 WP_003096622.1 oxidative stress transcriptional regulator OxyR -
  QQX47_RS28135 (QQX47_28130) recG 6039304..6041379 (+) 2076 WP_180361212.1 ATP-dependent DNA helicase RecG Machinery gene
  QQX47_RS28140 (QQX47_28135) - 6041469..6042878 (+) 1410 WP_003098324.1 HDOD domain-containing protein -
  QQX47_RS28145 (QQX47_28140) - 6042950..6043342 (-) 393 WP_003117167.1 helicase -
  QQX47_RS28150 (QQX47_28145) - 6043478..6043750 (-) 273 WP_003096630.1 HU family DNA-binding protein -
  QQX47_RS28155 (QQX47_28150) alkT 6043952..6045106 (-) 1155 WP_003117168.1 rubredoxin-NAD(+) reductase AlkT -
  QQX47_RS28160 (QQX47_28155) - 6045158..6045325 (-) 168 WP_003098329.1 rubredoxin -
  QQX47_RS28165 (QQX47_28160) - 6045509..6045676 (-) 168 WP_003098330.1 rubredoxin -
  QQX47_RS28170 (QQX47_28165) - 6045810..6046211 (-) 402 WP_003098332.1 heme-binding protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 76109.77 Da        Isoelectric Point: 7.1192

>NTDB_id=770824 QQX47_RS28135 WP_180361212.1 6039304..6041379(+) (recG) [Pseudomonas aeruginosa strain Ned_5_BIM]
MTELSSVPVTALKGVGAALAEKLARVGLETLQDILFHLPLRYQDRTRVTAIGALRPGADAVVEGVVAGADVVMGRRRSLL
VRLQDGSGTLSLRFYHFSQAQKDGLKRGTHLRCYGEVRPGASGLEIYHPEYRALNGDEPIPVEQTLTPIYPTTEGLTQQR
LRQLSQQALAMLGPSSLPDWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQRLR
EAVRSQAAPRLPAASRLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDVGAGKTVVAALAALQAIEAGYQV
ALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGKARAAALERIGDGAPMVVGTHALFQDEVKFKRLALAIIDEQHR
FGVQQRLALRQKGVDGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAACRE
GRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAFKEGMLQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVRDAAQSLLAHWPQHVSPLLERWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=770824 QQX47_RS28135 WP_180361212.1 6039304..6041379(+) (recG) [Pseudomonas aeruginosa strain Ned_5_BIM]
ATGACCGAGCTGTCCAGCGTCCCGGTCACCGCGCTAAAGGGCGTAGGCGCCGCGCTGGCGGAGAAGCTCGCTCGGGTAGG
CCTGGAAACCCTGCAGGACATCCTGTTCCACCTGCCCCTGCGCTACCAGGACCGTACCCGCGTCACCGCCATCGGCGCCC
TGCGGCCAGGGGCCGACGCGGTGGTCGAGGGCGTGGTGGCCGGCGCCGACGTGGTGATGGGGCGCCGCCGCAGCCTGCTG
GTGCGCCTGCAGGACGGCAGCGGCACCCTGAGCCTGCGCTTCTACCATTTCAGCCAGGCGCAGAAGGACGGTCTCAAGCG
CGGCACCCACCTGCGCTGCTACGGCGAAGTCCGGCCGGGTGCCTCGGGCCTGGAGATCTACCATCCGGAATACCGCGCGC
TGAACGGCGACGAGCCGATTCCGGTGGAGCAGACCCTGACGCCGATCTACCCGACTACCGAGGGCCTCACCCAGCAGCGC
CTGCGCCAGTTGAGCCAACAGGCCCTGGCCATGCTCGGCCCCAGCAGCCTGCCCGACTGGCTGCCGGCGGAACTGGCCCG
CGATTACCAACTTGGCCCGCTCGACCAGGCGATCCGCTACCTGCACCGGCCGCCGCCGGATGCCGACATCGAGGAACTGG
CCGAAGGCCGGCACTGGGCGCAGTTGCGCCTGGCCTTCGAAGAACTGCTGACCCACCAGTTATCCCTGCAGCGCCTGCGC
GAAGCCGTGCGTTCGCAGGCAGCGCCGCGCTTGCCGGCGGCCAGCCGCTTGCCGAAACGCTTCCTTGCCAACCTCGGCTT
CCAGCCGACCGGCGCGCAACGCCGGGTCGGCGCGGAGATCGCCTACGACCTGGCCCAGGACGAACCGATGCTGCGCCTGG
TGCAAGGCGACGTCGGCGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCCCTGCAAGCCATAGAGGCCGGTTACCAGGTG
GCGCTGATGGCGCCGACCGAGATCCTCGCCGAGCAGCATTTCCTCAACTTCAGCAAGTGGCTCCAGCCGCTGGACATCGA
AGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGCGCGGCGGCACTGGAACGCATCGGCGACGGCGCGCCGATGG
TGGTCGGCACCCACGCGCTGTTCCAGGATGAAGTGAAATTCAAGCGCCTTGCACTGGCGATCATCGACGAACAGCACCGC
TTCGGCGTGCAGCAGCGCCTGGCCCTGCGCCAGAAGGGCGTGGACGGCAGGCTCTGCCCACACCAGTTGATCATGACCGC
CACGCCGATCCCGCGGACCCTGGCGATGAGCGCCTATGCCGACCTCGACACCTCGATCCTCGACGAGCTGCCGCCCGGGC
GTACCCCGGTGAATACCGTGCTGGTGGCCGACAGCCGCCGTATCGAGGTGATCGAGCGAGTCCGCGCGGCTTGCCGCGAA
GGGCGCCAGGCCTACTGGGTGTGTACCCTGATCGAAGAGTCCGAGGAGCTTACCTGCCAGGCCGCCGAGACCACCTACGA
AGAGCTTTCCTCGGCGCTGGGCGAACTGCGCGTCGGCCTGATCCACGGGCGCATGAAGCCGGCGGACAAGGCCGTGGTGA
TGGAGGCCTTCAAGGAAGGCATGTTGCAACTGCTGGTGGCGACCACGGTGATCGAGGTCGGCGTCGACGTGCCCAACGCC
AGCCTGATGATCATCGAGAACCCCGAGCGCCTTGGCCTGGCCCAACTGCACCAGCTACGCGGCCGGGTTGGCCGGGGCAG
CGCCGCCAGCCACTGCGTGCTGCTCTACCACCCACCGCTGTCGCAGATCGGCCGCGAGCGGCTGGGCATCATGCGCGAAA
CCAGCGACGGCTTCGTCATCGCCGAGAAGGACCTGGAATTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAGACCGGC
CTGCTGCAATTCAAGGTCGCCGACCTGATGCGCGACGCAGACCTGCTGCCGGCGGTCCGCGATGCCGCCCAATCCCTCCT
GGCGCACTGGCCGCAGCATGTCAGCCCGCTGCTCGAACGGTGGTTGCGCCACGGCCAGCAATACGGTCAAGTGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(293-430)

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)

RecG wedge domain (RecG_wedge)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.373

97.106

0.489
  recG/mmsA Streptococcus pneumoniae R6

40.868

96.671

0.395
  recG/mmsA Streptococcus pneumoniae R36A

40.868

96.671

0.395
  recG Bacillus subtilis subsp. subtilis str. 168

40.356

97.54

0.394