Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   QP019_RS12095 Genome accession   NZ_CP126978
Coordinates   2506961..2509045 (+) Length   694 a.a.
NCBI ID   WP_285096326.1    Uniprot ID   -
Organism   Gallibacterium anatis strain YJ922     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2501961..2514045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP019_RS12075 (QP019_12075) - 2503108..2503737 (+) 630 WP_013745712.1 MarC family protein -
  QP019_RS12080 (QP019_12080) gmk 2503821..2504450 (+) 630 WP_285096324.1 guanylate kinase -
  QP019_RS12085 (QP019_12085) rpoZ 2504514..2504786 (+) 273 WP_013745710.1 DNA-directed RNA polymerase subunit omega -
  QP019_RS12090 (QP019_12090) spoT 2504823..2506961 (+) 2139 WP_285096325.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  QP019_RS12095 (QP019_12095) recG 2506961..2509045 (+) 2085 WP_285096326.1 ATP-dependent DNA helicase RecG Machinery gene
  QP019_RS12100 (QP019_12100) - 2509038..2509553 (+) 516 WP_285096327.1 chorismate lyase -
  QP019_RS12105 (QP019_12105) murI 2509698..2510486 (+) 789 WP_285096328.1 glutamate racemase -

Sequence

Protein


Download         Length: 694 a.a.        Molecular weight: 77976.19 Da        Isoelectric Point: 7.6530

>NTDB_id=769760 QP019_RS12095 WP_285096326.1 2506961..2509045(+) (recG) [Gallibacterium anatis strain YJ922]
MQAETLLDHLPLTVLSGVGAAMSERLSRLGIRSVQDLLFHFPLRYEDRTHITPIIDLRPDSYATIEGIVQTCEVQFGRRP
MLTVSLSDGSSKIMLRFFNFNAGMKNSFSSGARVKAFGEIRRGRFMAEMHHPEYRIIHHNEPLTLDENLTPIYPSTEGLK
QASWRKLTDQALALLDKATIKELLPTEFNPSGYDLKSAVQFLHRPPAGTLSEMLEKGEHPAQQRLAFEELLAHNLAMQKS
KQDAQQNSAIVLRYQSNIKQQFLATLPFTPTKAQLRVVEEIEQDLQRSQPMMRLIQGDVGSGKTLVALLASLVALDNQQQ
VAIMAPTEILAEQHLHNFSHWLEPFGIKVGWLAGKVKGKKRQQSLAQIQCGETQVVIGTHALFQEQVEFHSLALVIIDEQ
HRFGVEQRLLLREKGAKNGLYPHQLIMTATPIPRTLAMTVYADLDVSVIDELPPGRTPIKTVAIAEDRRDELVQRVFHAC
TVDKRQVYWVCTLIDESEVLEAQAAEALAEDLRKALPMLKIGLVHGRMKPQEKQDVMAIFKAGEIDVLVATTVIEVGVDV
PNASLMIIENAERLGLSQLHQLRGRVGRGQIESFCVLLYKAPLGKISRQRLDIMRSSNDGFVIAEKDLEIRGPGEVLGVK
QTGVAEFKVANLVRNRRLLPAVQRCANQLMQINSPNIEQLIHRWLDQKIEYSNA

Nucleotide


Download         Length: 2085 bp        

>NTDB_id=769760 QP019_RS12095 WP_285096326.1 2506961..2509045(+) (recG) [Gallibacterium anatis strain YJ922]
ATGCAAGCAGAAACATTACTTGATCATTTGCCTCTTACTGTTCTTTCCGGTGTTGGTGCGGCAATGTCGGAAAGATTATC
TCGTTTAGGAATCCGTTCCGTTCAAGATCTCTTATTCCATTTTCCACTGCGTTACGAAGATCGCACTCACATTACTCCAA
TTATTGATTTGCGTCCGGATAGTTATGCCACGATCGAGGGCATTGTGCAGACGTGTGAAGTTCAGTTTGGTCGCCGACCG
ATGTTAACGGTTTCCCTTTCCGACGGCTCATCAAAAATTATGTTGCGTTTTTTTAATTTTAATGCCGGGATGAAAAACAG
TTTTTCGAGTGGAGCCAGAGTAAAGGCATTCGGGGAAATTCGACGTGGGCGATTTATGGCAGAAATGCACCATCCGGAAT
ATCGTATTATTCACCATAATGAGCCTTTGACCTTAGATGAAAACCTCACGCCGATTTACCCTTCAACGGAAGGACTAAAA
CAAGCATCTTGGCGAAAATTGACGGATCAAGCATTGGCATTATTGGATAAAGCCACTATTAAAGAGCTGCTTCCCACAGA
ATTTAACCCTAGTGGGTATGATTTGAAAAGTGCAGTGCAGTTTTTACATCGACCGCCGGCGGGTACCCTATCTGAAATGT
TGGAAAAAGGGGAACATCCGGCACAACAGCGTTTAGCATTTGAAGAGCTGTTGGCACATAACTTAGCAATGCAAAAAAGT
AAGCAAGATGCACAACAGAACTCAGCGATTGTGTTACGTTATCAGAGCAATATCAAGCAACAATTCTTGGCAACGTTGCC
ATTTACCCCAACAAAAGCACAATTACGAGTAGTAGAAGAGATTGAGCAGGATCTGCAACGATCTCAACCGATGATGCGTT
TAATTCAAGGCGATGTTGGTTCCGGAAAAACGTTAGTGGCATTATTGGCTTCTTTAGTGGCGTTGGATAATCAGCAACAG
GTGGCGATTATGGCGCCAACGGAAATTCTTGCAGAACAGCATTTGCATAATTTTTCTCATTGGCTGGAACCGTTTGGCAT
TAAGGTCGGTTGGTTGGCAGGTAAGGTAAAAGGCAAAAAACGACAGCAGTCATTGGCACAGATTCAATGTGGTGAAACGC
AAGTGGTTATTGGCACGCACGCTTTATTTCAGGAGCAAGTGGAGTTTCATTCGTTAGCGTTGGTGATCATTGATGAACAG
CACCGTTTCGGCGTTGAACAACGGTTATTGTTGCGTGAAAAAGGCGCAAAGAATGGATTGTATCCGCATCAACTGATTAT
GACGGCAACGCCAATTCCTCGTACCTTAGCAATGACGGTATATGCTGATTTGGATGTTTCCGTTATTGATGAGTTACCAC
CCGGCAGAACGCCGATAAAAACTGTAGCGATTGCGGAAGATCGACGAGATGAATTGGTTCAGCGCGTGTTTCACGCTTGT
ACTGTGGATAAACGGCAAGTTTATTGGGTTTGTACATTAATTGATGAGTCTGAAGTGTTGGAGGCGCAAGCAGCCGAAGC
ATTGGCGGAGGATTTGCGTAAAGCATTACCAATGCTTAAAATCGGTTTGGTTCACGGCAGAATGAAACCGCAGGAAAAAC
AGGATGTAATGGCTATTTTTAAGGCCGGTGAAATTGATGTGTTGGTGGCAACCACTGTCATTGAAGTTGGTGTAGATGTG
CCTAATGCCAGTTTGATGATTATTGAAAATGCGGAAAGACTAGGATTATCTCAACTTCATCAATTACGCGGACGTGTCGG
TCGAGGGCAGATTGAGTCTTTTTGTGTCCTACTTTATAAGGCGCCGTTGGGCAAAATTTCCCGTCAACGATTGGATATTA
TGCGTAGCAGCAATGATGGTTTTGTCATTGCAGAAAAAGATTTAGAAATCAGAGGTCCGGGAGAAGTATTGGGTGTTAAA
CAGACAGGTGTGGCAGAGTTTAAAGTGGCGAATTTAGTGCGCAACAGGCGTTTACTACCGGCAGTGCAACGGTGTGCAAA
TCAGTTAATGCAAATAAATTCGCCCAATATAGAACAGTTAATCCATCGCTGGTTGGATCAAAAGATAGAATATTCCAATG
CATAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(291-407)

RecG wedge domain (RecG_wedge)

(16-172)

Helicase conserved C-terminal domain (Helicase_C)

(481-589)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(618-672)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

48.291

96.974

0.468
  recG/mmsA Streptococcus pneumoniae R6

39.912

97.839

0.39
  recG/mmsA Streptococcus pneumoniae R36A

39.912

97.839

0.39
  recG Bacillus subtilis subsp. subtilis str. 168

39.339

95.965

0.378