Detailed information NTG0769736

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: QP019_RS08545
• Genome accession: NZ_CP126978
• Coordinates: 1733793..1734929 (-)
• Length: 378 a.a.
• NCBI ID: WP_285096029.1
• Uniprot ID: -
• Organism: Gallibacterium anatis strain YJ922
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1728793..1739929

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QP019_RS08520 (QP019_08520)	secM	1730158..1730493 (-)	336	WP_285096027.1	secA translation cis-regulator SecM	-
QP019_RS08525 (QP019_08525)	-	1730584..1730925 (+)	342	WP_018346997.1	DciA family protein	-
QP019_RS08530 (QP019_08530)	-	1730885..1731784 (-)	900	WP_049804996.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	-
QP019_RS08535 (QP019_08535)	aroB	1731788..1732879 (-)	1092	WP_285096028.1	3-dehydroquinate synthase	-
QP019_RS08540 (QP019_08540)	aroK	1732913..1733440 (-)	528	WP_013746277.1	shikimate kinase AroK	-
QP019_RS08545 (QP019_08545)	comE	1733793..1734929 (-)	1137	WP_285096029.1	type IV pilus secretin PilQ	Machinery gene
QP019_RS08550 (QP019_08550)	-	1734929..1735459 (-)	531	WP_285096030.1	hypothetical protein	-
QP019_RS08555 (QP019_08555)	-	1735459..1736013 (-)	555	WP_285096031.1	hypothetical protein	-
QP019_RS08560 (QP019_08560)	-	1736003..1736677 (-)	675	WP_285096032.1	hypothetical protein	-
QP019_RS08565 (QP019_08565)	-	1736878..1739439 (+)	2562	WP_285096033.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 41837.89 Da
• Isoelectric Point: 5.8585

>NTDB_id=769736 QP019_RS08545 WP_285096029.1 1733793..1734929(-) (comE) [Gallibacterium anatis strain YJ922]
MKKGIILVVCMMMSLSGWSKKVILDPFFAEEANIMPDLIGDKNLAATDEFEAIAVKYIQVNELYKIFNENGNGLLSGLSG
FSVEPSNNLLLVKGDKQQIQKFKQLISQLDKPGKQIAIEARIVTINNESLNELGVRWGMFSDADNFHKVAAKFDSFGLEN
LSSHLNVNFSTSSEAASIALQVAKIHGRLLDLELKALEQENNVEIIASPHLLTSNQRKASIKQGSEIPYVIEDDTERSSR
THIEFKEAVLGLEVTPQVLHQGVISLDLVVTQNSAGASIPYGAGQVVTIDKQEVQSQVLVRDGETVVLGGIFHDLIGKGE
NKVPLLGDIPGLGNLFSSKSERHQKRELVIFITPRIIHNSQETIENYQKRKQDFMKSF

Nucleotide

• Length: 1137 bp

>NTDB_id=769736 QP019_RS08545 WP_285096029.1 1733793..1734929(-) (comE) [Gallibacterium anatis strain YJ922]
ATGAAGAAAGGCATAATACTGGTGGTTTGTATGATGATGTCATTGAGCGGTTGGAGCAAAAAAGTGATATTAGATCCTTT
TTTTGCGGAAGAGGCGAATATAATGCCTGACTTAATAGGGGATAAAAATTTGGCTGCGACAGATGAATTTGAAGCAATTG
CTGTGAAATATATACAAGTGAATGAATTGTATAAAATTTTTAATGAAAACGGTAATGGGCTTTTGTCCGGACTGAGCGGA
TTTAGTGTCGAACCGAGCAACAATTTATTGTTGGTGAAAGGGGATAAGCAACAGATACAAAAATTTAAACAGTTAATTTC
TCAACTGGATAAACCGGGTAAGCAGATTGCCATAGAAGCACGCATAGTGACGATTAATAATGAAAGTCTAAATGAGCTTG
GCGTTCGTTGGGGAATGTTCAGTGATGCGGATAATTTTCACAAAGTGGCAGCTAAATTTGATAGTTTTGGTTTAGAAAAT
TTAAGTTCTCACTTAAATGTTAATTTTTCCACGAGTTCGGAGGCTGCATCTATTGCATTACAGGTGGCAAAAATTCACGG
GCGGTTGCTGGATTTGGAGTTAAAAGCGTTGGAACAGGAAAATAATGTGGAAATTATTGCCAGCCCACATTTATTAACAT
CTAACCAAAGAAAGGCATCGATTAAGCAAGGTTCTGAAATTCCTTATGTTATCGAAGATGATACAGAACGCAGCAGCCGT
ACTCATATTGAATTTAAAGAGGCAGTATTGGGTTTGGAAGTGACCCCTCAAGTTCTGCATCAAGGCGTGATCTCACTGGA
TTTGGTGGTAACACAGAATTCAGCCGGTGCGAGTATTCCTTATGGTGCCGGGCAAGTGGTAACGATTGATAAACAGGAAG
TGCAATCGCAAGTGTTGGTGAGAGATGGAGAAACGGTGGTGTTGGGCGGTATTTTTCACGATCTGATCGGAAAAGGTGAA
AATAAAGTGCCGTTGTTGGGGGATATTCCCGGATTAGGCAATTTATTCAGTAGCAAATCGGAGCGTCATCAGAAGCGTGA
GCTGGTGATTTTTATTACACCAAGAATTATTCATAATTCTCAAGAAACAATAGAAAATTATCAAAAGCGTAAACAGGATT
TTATGAAAAGCTTTTAG

Domains

Predicted by InterProScan.

• Bacterial type II and III secretion system protein (Secretin) (196-358)

• Bacterial type II/III secretion system short domain (Secretin_N) (52-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Haemophilus influenzae 86-028NP	53.438	84.656	0.452
comE	Haemophilus influenzae Rd KW20	53.106	85.185	0.452
comE	Glaesserella parasuis strain SC1401	48.632	87.037	0.423
pilQ	Vibrio campbellii strain DS40M4	42.508	86.508	0.368