Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   QP020_RS12075 Genome accession   NZ_CP126977
Coordinates   2548292..2550376 (+) Length   694 a.a.
NCBI ID   WP_285098268.1    Uniprot ID   -
Organism   Gallibacterium anatis strain DFSO2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2543292..2555376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP020_RS12055 (QP020_12055) - 2544439..2545068 (+) 630 WP_013745712.1 MarC family protein -
  QP020_RS12060 (QP020_12060) gmk 2545152..2545781 (+) 630 WP_018346197.1 guanylate kinase -
  QP020_RS12065 (QP020_12065) rpoZ 2545845..2546117 (+) 273 WP_013745710.1 DNA-directed RNA polymerase subunit omega -
  QP020_RS12070 (QP020_12070) spoT 2546154..2548292 (+) 2139 WP_013745709.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  QP020_RS12075 (QP020_12075) recG 2548292..2550376 (+) 2085 WP_285098268.1 ATP-dependent DNA helicase RecG Machinery gene
  QP020_RS12080 (QP020_12080) - 2550369..2550884 (+) 516 WP_285098271.1 chorismate lyase -
  QP020_RS12085 (QP020_12085) murI 2551029..2551817 (+) 789 WP_285098272.1 glutamate racemase -

Sequence

Protein


Download         Length: 694 a.a.        Molecular weight: 77815.04 Da        Isoelectric Point: 7.6176

>NTDB_id=769706 QP020_RS12075 WP_285098268.1 2548292..2550376(+) (recG) [Gallibacterium anatis strain DFSO2]
MQAETLLDHLPLTVLSGVGVAMSERLSRLGIRSVQDLLFHFPLRYEDRTHITPIIDLRPDSYATIEGIVQTCEVQFGRRP
MLTVSLSDGSSKIMLRFFNFNAGMKNSFSSGARVKAFGEIRRGRFMAEMHHPEYRIIHHNEPLTLDENLTPIYPSTEGLK
QASWRKLTDQALALLDKATIKELLPTEFNPSGYDLKSAVQFLHRPPAGTLSEMLEKGEHPAQQRLAFEELLAHNLAMQKS
KQDAQQNSAIALRYQSNIKQQFLATLPFTPTKAQLRVVGEIEQDLQRSQPMMRLIQGDVGSGKTLVALLASLVALDNQQQ
VAIMAPTEILAEQHLHNFSHWLEPFGIKVGWLAGKVKGKKRQQSLAQIQCGETQVVIGTHALFQEQVEFHSLALVIIDEQ
HRFGVEQRLLLREKGAKNGLYPHQLIMTATPIPRTLAMTVYADLDVSVIDELPPGRTPIKTVAIAEDRRDELVQRVFHAC
TVDKRQVYWVCTLIDESEVLEAQAAEALAEDLCKALPMLKIGLVHGRMKPQEKQDVMAIFKAGEIDVLVATTVIEVGVDV
PNASLMIIENAERLGLSQLHQLRGRVGRGQIESFCVLLYKAPLGKISRQRLDIMRSSNDGFVIAEKDLEIRGPGEVLGVK
QTGVAEFKVANLVRNRRLLPAVQRCANQLMQISSPNIEQLIQRWLDQKIEYSNA

Nucleotide


Download         Length: 2085 bp        

>NTDB_id=769706 QP020_RS12075 WP_285098268.1 2548292..2550376(+) (recG) [Gallibacterium anatis strain DFSO2]
ATGCAAGCAGAAACATTACTTGATCATTTGCCTCTTACTGTTCTTTCCGGTGTTGGCGTGGCAATGTCGGAAAGATTATC
TCGTTTAGGAATCCGTTCCGTTCAAGATCTCTTATTCCATTTTCCATTGCGTTACGAAGATCGCACACATATTACCCCAA
TCATTGATTTGCGTCCGGATAGTTATGCCACGATCGAGGGCATTGTGCAGACGTGTGAAGTTCAGTTTGGTCGCCGGCCG
ATGTTAACGGTTTCCCTTTCTGACGGCTCATCAAAAATTATGTTGCGTTTTTTTAATTTTAATGCCGGAATGAAGAACAG
TTTTTCGAGTGGAGCCAGAGTAAAGGCATTCGGGGAAATCCGACGTGGACGATTTATGGCGGAAATGCACCATCCGGAAT
ATCGTATCATTCACCATAATGAGCCTTTGACCTTAGATGAAAACCTCACGCCGATTTACCCTTCAACGGAAGGACTAAAA
CAAGCATCTTGGCGAAAATTGACGGATCAAGCATTGGCATTATTGGATAAAGCCACTATTAAAGAGCTGCTTCCCACAGA
ATTTAACCCTAGTGGCTATGATTTGAAAAGTGCAGTGCAGTTTTTACATCGACCGCCGGCGGGCACCCTATCTGAAATGT
TGGAAAAAGGGGAACATCCGGCACAACAGCGTTTAGCATTTGAAGAGCTGTTGGCACATAACTTAGCAATGCAAAAAAGT
AAGCAAGATGCACAACAGAACTCAGCGATTGCGTTACGTTATCAGAGCAATATCAAGCAACAATTCTTGGCAACGTTGCC
ATTTACCCCAACAAAAGCACAATTACGAGTAGTAGGAGAGATTGAGCAAGATCTGCAACGATCTCAACCGATGATGCGTT
TAATTCAAGGCGATGTTGGTTCTGGAAAAACGTTAGTGGCATTATTGGCTTCTTTAGTGGCGTTGGATAATCAGCAACAG
GTGGCGATTATGGCGCCAACGGAAATTCTTGCAGAACAGCATTTGCATAATTTTTCTCATTGGCTGGAGCCGTTTGGCAT
TAAGGTCGGTTGGTTGGCAGGTAAGGTAAAAGGTAAAAAGCGACAGCAGTCATTGGCACAGATTCAATGTGGTGAAACGC
AAGTGGTTATTGGCACGCACGCTTTATTTCAGGAGCAAGTGGAGTTTCATTCGTTAGCGTTGGTGATCATTGATGAACAG
CACCGTTTCGGCGTTGAACAACGGTTATTATTGCGTGAAAAAGGTGCAAAGAATGGATTGTATCCGCATCAACTGATTAT
GACAGCGACGCCAATTCCTCGTACCTTAGCAATGACGGTATATGCTGATTTGGATGTTTCTGTTATTGATGAGTTACCAC
CCGGCAGAACGCCGATAAAAACTGTAGCGATTGCGGAAGATCGGAGAGATGAGTTGGTTCAGCGCGTGTTTCACGCTTGT
ACTGTGGATAAACGGCAAGTTTATTGGGTTTGTACATTAATTGATGAGTCTGAAGTGTTGGAGGCGCAAGCAGCCGAAGC
ATTGGCGGAGGATTTGTGCAAAGCATTACCAATGCTTAAAATCGGTTTGGTTCACGGCAGAATGAAACCACAGGAAAAAC
AGGATGTAATGGCTATTTTTAAGGCTGGTGAAATTGATGTGTTGGTGGCAACCACTGTCATTGAAGTTGGTGTAGATGTG
CCTAATGCCAGTTTGATGATTATTGAGAATGCGGAAAGACTAGGATTATCTCAACTTCATCAATTACGCGGACGTGTCGG
TCGAGGGCAGATTGAGTCTTTTTGTGTCCTACTTTATAAAGCGCCGTTGGGCAAAATTTCCCGTCAACGATTGGATATTA
TGCGTAGCAGCAATGATGGTTTTGTCATTGCAGAAAAAGATTTAGAAATCAGAGGGCCGGGAGAAGTATTGGGTGTTAAA
CAGACTGGTGTGGCAGAGTTTAAAGTGGCGAATTTAGTGCGCAACAGGCGTTTACTACCAGCAGTGCAACGGTGTGCAAA
TCAATTAATGCAAATAAGTTCGCCCAATATAGAACAGTTAATCCAACGCTGGTTGGATCAAAAGATAGAATATTCCAATG
CATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(481-589)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(618-671)

RecG wedge domain (RecG_wedge)

(16-172)

DEAD/DEAH box helicase (DEAD)

(293-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

48.291

96.974

0.468
  recG/mmsA Streptococcus pneumoniae R6

39.764

97.839

0.389
  recG/mmsA Streptococcus pneumoniae R36A

39.764

97.839

0.389
  recG Bacillus subtilis subsp. subtilis str. 168

39.367

95.533

0.376