Detailed information NTG0769683

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: QP020_RS08170
• Genome accession: NZ_CP126977
• Coordinates: 1728329..1729465 (-)
• Length: 378 a.a.
• NCBI ID: WP_285097709.1
• Uniprot ID: -
• Organism: Gallibacterium anatis strain DFSO2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1723329..1734465

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QP020_RS08145 (QP020_08145)	secM	1724693..1725010 (-)	318	WP_285097707.1	secA translation cis-regulator SecM	-
QP020_RS08150 (QP020_08150)	-	1725119..1725460 (+)	342	WP_018346997.1	DciA family protein	-
QP020_RS08155 (QP020_08155)	-	1725420..1726319 (-)	900	WP_049804996.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	-
QP020_RS08160 (QP020_08160)	aroB	1726323..1727414 (-)	1092	WP_285097708.1	3-dehydroquinate synthase	-
QP020_RS08165 (QP020_08165)	aroK	1727449..1727976 (-)	528	WP_013746277.1	shikimate kinase AroK	-
QP020_RS08170 (QP020_08170)	comE	1728329..1729465 (-)	1137	WP_285097709.1	type IV pilus secretin PilQ	Machinery gene
QP020_RS08175 (QP020_08175)	-	1729465..1729995 (-)	531	WP_039162842.1	hypothetical protein	-
QP020_RS08180 (QP020_08180)	-	1729995..1730549 (-)	555	WP_013746280.1	hypothetical protein	-
QP020_RS08185 (QP020_08185)	-	1730539..1731213 (-)	675	WP_256940349.1	hypothetical protein	-
QP020_RS08190 (QP020_08190)	-	1731414..1733975 (+)	2562	WP_285097710.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 41946.07 Da
• Isoelectric Point: 5.8621

>NTDB_id=769683 QP020_RS08170 WP_285097709.1 1728329..1729465(-) (comE) [Gallibacterium anatis strain DFSO2]
MKKGVILMVCMMISLSGWSKKVILDPFFTEEANIMPDLIEDKNLAPTDEFEAIAVKYIQVNELYKIFNENGNGLLSGLSG
FSVEPSNNLLLVKGDKQQIQKFKQLISQLDKPGKQIAIEARIVTINNESLNELGVRWGMFSDADNFHKVAAKFDSFGLEN
LSSHLNVNFSTSSEAASIALQVAKIHGRLLDLELKALEQENNVEIIASPHLLTSNQRKASIKQGSEIPYVIEDDTERSSR
THIEFKEAVLGLEVTPQVLHQGVISLDLVVTQNSAGASIPYGAGQVVTIDKQEVQSQVLVRDGETVVLGGIFHDLIGKGE
NKVPLLGDIPGLGKLFSSKSERHQKRELVIFITPRIIHNSQETIENYQKRKQDFMKSL

Nucleotide

• Length: 1137 bp

>NTDB_id=769683 QP020_RS08170 WP_285097709.1 1728329..1729465(-) (comE) [Gallibacterium anatis strain DFSO2]
ATGAAGAAAGGCGTAATACTGATGGTTTGTATGATGATTTCCTTGAGCGGTTGGAGCAAAAAAGTGATATTAGATCCTTT
TTTTACGGAAGAGGCGAATATAATGCCTGACTTAATAGAGGATAAAAATTTGGCTCCGACAGATGAATTTGAAGCAATTG
CTGTGAAATATATACAAGTGAATGAATTGTATAAAATTTTTAATGAAAACGGTAATGGGCTTTTGTCCGGCTTGAGCGGA
TTTAGTGTCGAACCGAGCAACAATTTATTGTTGGTGAAAGGGGATAAGCAACAGATACAAAAATTTAAACAGTTAATTTC
TCAACTGGATAAACCGGGTAAGCAGATTGCCATAGAAGCACGCATAGTGACGATTAATAATGAAAGTCTAAATGAGCTTG
GCGTTCGTTGGGGAATGTTCAGTGATGCGGATAATTTTCACAAAGTGGCAGCTAAATTTGATAGTTTTGGTTTAGAAAAT
TTAAGTTCTCACTTAAATGTTAATTTTTCCACGAGTTCGGAGGCTGCATCTATTGCATTACAGGTGGCAAAAATTCACGG
GCGGTTGCTGGATTTAGAGTTAAAAGCGTTGGAACAGGAAAATAATGTGGAAATTATTGCCAGCCCACACTTATTAACAT
CTAACCAAAGAAAGGCATCGATTAAGCAAGGCTCTGAAATTCCTTATGTTATCGAAGATGATACAGAACGCAGCAGCCGT
ACTCATATTGAATTTAAAGAGGCAGTATTGGGTTTGGAAGTGACCCCACAAGTGCTGCATCAAGGCGTGATCTCACTGGA
TTTGGTGGTAACGCAGAATTCAGCCGGTGCGAGTATTCCTTATGGTGCCGGGCAAGTGGTAACGATTGATAAACAGGAAG
TGCAATCGCAAGTGTTGGTGAGAGATGGAGAAACGGTGGTGTTGGGCGGTATTTTTCACGATCTGATCGGAAAAGGTGAA
AATAAAGTACCGTTGTTGGGGGATATTCCCGGATTAGGTAAGTTATTCAGTAGCAAATCGGAGCGTCATCAGAAGCGTGA
GCTGGTGATTTTTATTACACCAAGAATTATTCATAATTCTCAAGAAACGATAGAAAATTATCAAAAGCGTAAACAGGATT
TTATGAAAAGCCTTTAG

Domains

Predicted by InterProScan.

• Bacterial type II and III secretion system protein (Secretin) (196-358)

• Bacterial type II/III secretion system short domain (Secretin_N) (52-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Haemophilus influenzae 86-028NP	53.438	84.656	0.452
comE	Haemophilus influenzae Rd KW20	53.106	85.185	0.452
comE	Glaesserella parasuis strain SC1401	48.923	85.979	0.421
pilQ	Vibrio campbellii strain DS40M4	42.508	86.508	0.368