Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   QP018_RS13055 Genome accession   NZ_CP126975
Coordinates   2754124..2756208 (+) Length   694 a.a.
NCBI ID   WP_285092702.1    Uniprot ID   A0AAX3XF16
Organism   Gallibacterium anatis strain BJF12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2749124..2761208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP018_RS13035 (QP018_13035) - 2750271..2750900 (+) 630 WP_013745712.1 MarC family protein -
  QP018_RS13040 (QP018_13040) gmk 2750984..2751619 (+) 636 WP_039155026.1 guanylate kinase -
  QP018_RS13045 (QP018_13045) rpoZ 2751677..2751949 (+) 273 WP_013745710.1 DNA-directed RNA polymerase subunit omega -
  QP018_RS13050 (QP018_13050) spoT 2751986..2754124 (+) 2139 WP_013745709.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  QP018_RS13055 (QP018_13055) recG 2754124..2756208 (+) 2085 WP_285092702.1 ATP-dependent DNA helicase RecG Machinery gene
  QP018_RS13060 (QP018_13060) - 2756201..2756716 (+) 516 WP_285092701.1 chorismate lyase -
  QP018_RS13065 (QP018_13065) murI 2756861..2757652 (+) 792 WP_285092700.1 glutamate racemase -

Sequence

Protein


Download         Length: 694 a.a.        Molecular weight: 78020.25 Da        Isoelectric Point: 7.8629

>NTDB_id=769652 QP018_RS13055 WP_285092702.1 2754124..2756208(+) (recG) [Gallibacterium anatis strain BJF12]
MQAETLLDHLPLTVLSGVGVAMSERLSRLGIRSVQDLLFHFPLRYEDRTHITPIIDLRLDSYATIEGIVQTCEVQFGRRP
MLTVSLSDGSSKIMLRFFNFNAGMKNSFSSGARVKAFGEIRRGRFMAEMHHPEYRIIHHNEPLTLDENLTPIYPSTEGLK
QASWRKLTDQALALLNKATIKELLPTEFNPSGYDLKSAVQFLHRPPAGTLSEMLEKGEHPAQQRLAFEELLAHNLAMQKS
KQDAQQNSAIALRYHSNIKQQFLATLPFTPTKAQLRVVEEIEQDLQRSQPMMRLIQGDVGSGKTLVALLASLVALDNQQQ
VAIMAPTEILAEQHLHNFSHWLEPFGIKVGWLAGKVKGKKRQQSLAQIQCGETQVVIGTHALFQEQVEFHSLALVIIDEQ
HRFGVEQRLLLREKGAKNGFYPHQLIMTATPIPRTLAMTVYADLDVSVIDELPPGRTPIKTVAIAEDRRDELVQRVFHAC
TVDKRQVYWVCTLIDESEVLEAQAAEALAEDLRKALPMLKIGLVHGRMKPQEKQDVMAIFKAGEIDVLVATTVIEVGVDV
PNASLMIIENAERLGLSQLHQLRGRVGRGQVESFCVLLYKAPLGKISRQRLDIMRSSNDGFVIAEKDLEIRGPGEVLGVK
QTGVAEFKVANLVRNRRLLPAVQRCANQLMQINSPNIEQLIHRWLDQKIEYSNA

Nucleotide


Download         Length: 2085 bp        

>NTDB_id=769652 QP018_RS13055 WP_285092702.1 2754124..2756208(+) (recG) [Gallibacterium anatis strain BJF12]
ATGCAAGCAGAAACGTTACTTGATCATTTGCCTCTTACTGTTCTTTCCGGTGTTGGCGTGGCAATGTCGGAAAGATTATC
TCGTTTAGGAATCCGTTCCGTTCAAGATCTCTTATTCCATTTTCCACTGCGTTACGAAGATCGCACTCACATTACTCCAA
TCATTGATTTGCGTCTGGATAGTTATGCCACGATCGAGGGCATTGTGCAGACGTGTGAAGTTCAGTTTGGTCGCCGACCG
ATGTTAACGGTTTCCCTTTCTGACGGCTCATCAAAAATTATGTTGCGTTTTTTTAATTTTAATGCCGGGATGAAAAACAG
TTTTTCGAGTGGAGCCAGAGTAAAGGCATTCGGGGAAATTCGACGTGGACGATTTATGGCGGAAATGCACCATCCGGAAT
ATCGTATTATTCACCATAATGAGCCTTTGACCTTAGATGAAAACCTCACGCCGATTTACCCTTCAACGGAAGGACTAAAA
CAAGCATCTTGGCGAAAATTGACGGATCAAGCATTGGCATTATTGAATAAAGCCACTATTAAAGAGCTGCTCCCCACAGA
ATTTAACCCTAGTGGGTATGATTTGAAAAGTGCAGTGCAGTTTTTACATCGACCGCCGGCGGGCACCCTATCTGAAATGT
TGGAAAAAGGGGAACATCCGGCACAACAGCGTTTAGCATTTGAAGAACTGTTAGCACATAACTTAGCAATGCAAAAAAGT
AAGCAAGATGCACAACAGAACTCAGCGATTGCGTTACGTTATCATAGCAATATCAAGCAACAATTCTTGGCAACGTTGCC
ATTTACCCCAACAAAAGCACAATTACGAGTAGTAGAAGAGATTGAGCAGGATCTGCAACGATCTCAACCGATGATGCGTT
TAATTCAAGGCGATGTTGGTTCCGGAAAAACGTTAGTGGCATTATTGGCTTCTTTAGTGGCGTTGGATAATCAGCAACAG
GTGGCGATTATGGCGCCAACGGAAATTCTTGCAGAACAGCATTTGCATAATTTTTCTCATTGGCTGGAACCGTTTGGCAT
TAAGGTCGGTTGGTTGGCAGGTAAGGTAAAAGGTAAAAAACGACAGCAGTCATTGGCACAGATTCAATGTGGTGAAACGC
AAGTGGTTATTGGCACGCACGCTTTATTTCAGGAGCAAGTGGAGTTTCATTCGTTAGCGTTGGTGATCATTGATGAACAG
CACCGTTTCGGCGTTGAACAACGGTTATTGTTGCGTGAAAAAGGCGCAAAAAATGGATTTTATCCGCACCAACTGATTAT
GACAGCGACGCCAATTCCTCGTACCTTAGCAATGACGGTATATGCTGATTTGGATGTTTCTGTTATTGATGAGTTACCAC
CCGGCAGAACGCCGATAAAAACTGTAGCGATTGCGGAAGATCGACGAGATGAATTGGTTCAGCGCGTGTTTCACGCTTGT
ACTGTGGATAAACGGCAAGTTTATTGGGTTTGTACATTAATTGATGAGTCTGAAGTGTTGGAGGCGCAAGCAGCCGAAGC
ATTGGCGGAGGATTTGCGTAAAGCATTACCAATGCTTAAAATCGGTTTGGTTCACGGCAGAATGAAACCACAGGAAAAAC
AGGATGTAATGGCTATTTTTAAGGCCGGTGAAATTGATGTGTTGGTGGCAACCACTGTCATTGAAGTTGGTGTAGATGTG
CCGAATGCCAGTTTGATGATTATTGAAAATGCGGAAAGACTAGGATTATCTCAACTTCATCAATTACGCGGACGTGTCGG
TCGAGGGCAGGTTGAGTCTTTTTGTGTCCTACTTTATAAAGCGCCGTTGGGCAAAATTTCCCGTCAACGATTGGATATTA
TGCGTAGCAGCAATGATGGTTTTGTCATTGCAGAAAAAGATTTAGAAATTCGAGGTCCGGGAGAAGTGTTGGGTGTTAAA
CAGACAGGTGTGGCAGAGTTTAAAGTGGCGAATTTAGTGCGCAACAGGCGTTTACTACCGGCAGTGCAACGGTGTGCAAA
TCAGTTAATGCAAATAAATTCGCCCAATATAGAGCAATTAATCCATCGCTGGTTGGATCAAAAGATAGAATATTCCAATG
CATAA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(16-172)

Helicase conserved C-terminal domain (Helicase_C)

(481-589)

DEAD/DEAH box helicase (DEAD)

(291-407)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(618-672)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAX3XF16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

48.588

96.974

0.471
  recG/mmsA Streptococcus pneumoniae R6

39.764

97.839

0.389
  recG/mmsA Streptococcus pneumoniae R36A

39.764

97.839

0.389
  recG Bacillus subtilis subsp. subtilis str. 168

39.339

95.965

0.378