Detailed information NTG0769397

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PCP85_RS09395
• Genome accession: NZ_CP115213
• Coordinates: 2008658..2009530 (-)
• Length: 290 a.a.
• NCBI ID: WP_023092875.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain F063
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2003658..2014530

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP85_RS09350 (PCP85_09360)	-	2004519..2004689 (-)	171	WP_003094672.1	DUF3094 family protein	-
PCP85_RS09355 (PCP85_09365)	-	2004715..2005164 (-)	450	WP_003094670.1	MOSC domain-containing protein	-
PCP85_RS09360 (PCP85_09370)	-	2005161..2005790 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
PCP85_RS09365 (PCP85_09375)	-	2005923..2006348 (+)	426	WP_003094666.1	GNAT family N-acetyltransferase	-
PCP85_RS09370 (PCP85_09380)	-	2006345..2006815 (+)	471	WP_003094664.1	hypothetical protein	-
PCP85_RS09375 (PCP85_09385)	-	2006812..2007501 (+)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
PCP85_RS09380 (PCP85_09390)	-	2007607..2007816 (+)	210	WP_003094660.1	hypothetical protein	-
PCP85_RS09385 (PCP85_09395)	yacG	2007853..2008053 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PCP85_RS09390 (PCP85_09400)	coaE	2008050..2008661 (-)	612	WP_003094654.1	dephospho-CoA kinase	-
PCP85_RS09395 (PCP85_09405)	pilD	2008658..2009530 (-)	873	WP_023092875.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PCP85_RS09400 (PCP85_09410)	pilC	2009531..2010748 (-)	1218	WP_023092874.1	type II secretion system F family protein	Machinery gene
PCP85_RS09405 (PCP85_09415)	pilB	2010752..2012452 (-)	1701	WP_023092873.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PCP85_RS09410 (PCP85_09420)	-	2012683..2013147 (+)	465	WP_023092872.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31861.91 Da
• Isoelectric Point: 7.7068

>NTDB_id=769397 PCP85_RS09395 WP_023092875.1 2008658..2009530(-) (pilD) [Pseudomonas aeruginosa strain F063]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVMV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=769397 PCP85_RS09395 WP_023092875.1 2008658..2009530(-) (pilD) [Pseudomonas aeruginosa strain F063]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTTACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGATGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.64	95.862	0.476