Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   O8413_RS12995 Genome accession   NZ_CP115188
Coordinates   2788253..2788903 (-) Length   216 a.a.
NCBI ID   WP_014205868.1    Uniprot ID   -
Organism   Vibrio furnissii strain MT14     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2783253..2793903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O8413_RS12985 (O8413_12985) uvrA 2784294..2787116 (-) 2823 WP_283512640.1 excinuclease ABC subunit UvrA -
  O8413_RS12990 (O8413_12990) galU 2787254..2788123 (-) 870 WP_004724089.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  O8413_RS12995 (O8413_12995) qstR 2788253..2788903 (-) 651 WP_014205868.1 LuxR C-terminal-related transcriptional regulator Regulator
  O8413_RS13000 (O8413_13000) - 2789323..2790486 (+) 1164 WP_148524027.1 tyrosine-type recombinase/integrase -
  O8413_RS13005 (O8413_13005) - 2790486..2790917 (+) 432 WP_283512641.1 hypothetical protein -
  O8413_RS13015 (O8413_13015) - 2792014..2793858 (+) 1845 WP_283512642.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24779.49 Da        Isoelectric Point: 8.7565

>NTDB_id=768820 O8413_RS12995 WP_014205868.1 2788253..2788903(-) (qstR) [Vibrio furnissii strain MT14]
MQRANYARTIYYLCLDATLPPPPPLGDALTRLALPVPQIEPEQLLQAYQADKHKILLFNYGEHDAIRQRLGPLPITSPHL
ETILFGVEKRLRTEELLTFGNLKGLFYQDDAPSSIAQGLAEIINGQNWLPRHVSSQLLHYYRHIFQHHHTQATIELTTRE
LQILRSLQTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAITWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=768820 O8413_RS12995 WP_014205868.1 2788253..2788903(-) (qstR) [Vibrio furnissii strain MT14]
ATGCAACGCGCCAATTACGCCCGAACGATTTACTATTTGTGTCTGGATGCCACCCTCCCTCCGCCACCCCCATTGGGTGA
CGCACTCACACGACTCGCCCTGCCTGTGCCACAGATTGAACCCGAACAACTGTTGCAAGCGTATCAAGCCGACAAACATA
AAATCCTACTGTTTAATTATGGTGAACATGACGCGATTCGCCAGCGTTTAGGCCCCTTGCCCATCACCAGCCCCCACTTG
GAAACCATTTTATTTGGTGTAGAAAAACGCCTGCGCACGGAAGAACTTCTCACCTTTGGCAACCTGAAAGGCTTGTTTTA
TCAAGATGACGCGCCCTCATCGATCGCGCAGGGATTGGCGGAAATCATCAACGGTCAGAATTGGCTGCCACGCCATGTCA
GCAGTCAGTTGTTGCATTACTATCGCCACATTTTCCAGCATCATCACACGCAAGCCACCATCGAGCTCACCACACGTGAA
TTACAAATCCTACGCAGCTTGCAGACGGGTGCCTCAAACATGCAAATGGCGGAAAGCCTGTTCATCAGTGAATTTACCGT
CAAGTCGCACCTCTATCAGATCTTTAAAAAGCTCTCGGTCAAGAACCGAACCCAAGCCATCACATGGGCCAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

70.968

100

0.713
  qstR Vibrio parahaemolyticus RIMD 2210633

50.224

100

0.519
  qstR Vibrio campbellii strain DS40M4

51.389

100

0.514