Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QQA25_RS00400 Genome accession   NZ_CP126931
Coordinates   80508..81098 (+) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli O78:H51 strain APEC E19025     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 75508..86098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA25_RS00370 (QQA25_00370) emrD 75990..77174 (-) 1185 WP_000828746.1 multidrug efflux MFS transporter EmrD -
  QQA25_RS00375 (QQA25_00375) ysdE 77256..77330 (+) 75 WP_211180519.1 protein YsdE -
  QQA25_RS00380 (QQA25_00380) tisB 77593..77682 (-) 90 WP_000060506.1 type I toxin-antitoxin system toxin TisB -
  QQA25_RS00385 (QQA25_00385) ivbL 78247..78345 (+) 99 WP_001315912.1 ilvB operon leader peptide IvbL -
  QQA25_RS00390 (QQA25_00390) ilvB 78451..80139 (+) 1689 WP_000168480.1 acetolactate synthase large subunit -
  QQA25_RS00395 (QQA25_00395) ilvN 80143..80433 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  QQA25_RS00400 (QQA25_00400) letA 80508..81098 (+) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  QQA25_RS00405 (QQA25_00405) uhpB 81098..82600 (+) 1503 WP_001295243.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  QQA25_RS00410 (QQA25_00410) uhpC 82610..83929 (+) 1320 WP_001296914.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  QQA25_RS00415 (QQA25_00415) uhpT 84067..85458 (+) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=768645 QQA25_RS00400 WP_000633668.1 80508..81098(+) (letA) [Escherichia coli O78:H51 strain APEC E19025]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=768645 QQA25_RS00400 WP_000633668.1 80508..81098(+) (letA) [Escherichia coli O78:H51 strain APEC E19025]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAACTGCTAAGCCAGCTGCCGAAAGGTATGGCGACAATAATGCTCTCTGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCACGCGGCTTTCTCTCCAAACGCTGTAGCCCTGACGA
ACTGATTGCGGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GTCAGGACCCGCTAACCAAACGCGAACGGCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCTGCC
GAACTGGGCTTGTCGCCGAAAACGGTGCACGTCCATCGCGCCAACCTGATGGAAAAACTGGGTGTCAGTAACGACGTAGA
GCTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378