Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ORQ91_RS12005 Genome accession   NZ_CP115172
Coordinates   2353124..2353402 (-) Length   92 a.a.
NCBI ID   WP_024424746.1    Uniprot ID   A0AAP7QQG0
Organism   Bacillus safensis strain BS-10L     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2348124..2358402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORQ91_RS11985 (ORQ91_02397) ade 2348132..2349859 (-) 1728 WP_270125136.1 adenine deaminase -
  ORQ91_RS11990 (ORQ91_02398) - 2350121..2350789 (-) 669 WP_008345123.1 potassium channel family protein -
  ORQ91_RS11995 (ORQ91_02399) - 2350827..2351663 (-) 837 WP_029706715.1 gamma-glutamylcyclotransferase -
  ORQ91_RS12000 (ORQ91_02400) - 2351668..2352978 (-) 1311 WP_024424747.1 ATP-binding protein -
  ORQ91_RS12005 (ORQ91_02401) abrB 2353124..2353402 (-) 279 WP_024424746.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ORQ91_RS12010 (ORQ91_02402) mreBH 2353679..2354686 (+) 1008 WP_024424745.1 rod-share determining protein MreBH -
  ORQ91_RS12015 (ORQ91_02403) - 2354761..2354892 (+) 132 WP_003210922.1 protein YkpC -
  ORQ91_RS12020 (ORQ91_02404) - 2355000..2356232 (+) 1233 WP_024424744.1 aminopeptidase -
  ORQ91_RS12025 (ORQ91_02405) - 2356267..2357886 (-) 1620 WP_024426884.1 ABC-F family ATP-binding cassette domain-containing protein -
  ORQ91_RS12030 (ORQ91_02406) - 2358030..2358305 (+) 276 WP_024424743.1 hypothetical protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10306.01 Da        Isoelectric Point: 4.6909

>NTDB_id=768559 ORQ91_RS12005 WP_024424746.1 2353124..2353402(-) (abrB) [Bacillus safensis strain BS-10L]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=768559 ORQ91_RS12005 WP_024424746.1 2353124..2353402(-) (abrB) [Bacillus safensis strain BS-10L]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAGCTGCAAGAAGCTCTTCAGAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.945

98.913

0.543