Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ORQ91_RS02665 Genome accession   NZ_CP115172
Coordinates   541202..541858 (+) Length   218 a.a.
NCBI ID   WP_258011096.1    Uniprot ID   -
Organism   Bacillus safensis strain BS-10L     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 536202..546858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORQ91_RS02640 (ORQ91_00533) degS 536328..537503 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  ORQ91_RS02645 (ORQ91_00534) degU 537568..538257 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ORQ91_RS02650 (ORQ91_00535) - 538473..539315 (+) 843 WP_024423625.1 DegV family protein -
  ORQ91_RS02655 (ORQ91_00536) comFA 539436..540833 (+) 1398 WP_142927723.1 DEAD/DEAH box helicase Machinery gene
  ORQ91_RS02660 (ORQ91_00537) - 540882..541175 (+) 294 WP_024423623.1 late competence development ComFB family protein -
  ORQ91_RS02665 (ORQ91_00538) comFC 541202..541858 (+) 657 WP_258011096.1 ComF family protein Machinery gene
  ORQ91_RS02670 (ORQ91_00539) - 541915..542334 (+) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  ORQ91_RS02675 (ORQ91_00540) flgM 542414..542677 (+) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  ORQ91_RS02680 (ORQ91_00541) - 542696..543178 (+) 483 WP_103131678.1 flagellar protein FlgN -
  ORQ91_RS02685 (ORQ91_00542) flgK 543194..544714 (+) 1521 WP_122631681.1 flagellar hook-associated protein FlgK -
  ORQ91_RS02690 (ORQ91_00543) flgL 544724..545632 (+) 909 WP_024423617.1 flagellar hook-associated protein FlgL -
  ORQ91_RS02695 (ORQ91_00544) - 545679..546257 (+) 579 WP_024426253.1 DUF6470 family protein -
  ORQ91_RS02700 (ORQ91_00545) fliW 546286..546720 (+) 435 WP_024423615.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25006.14 Da        Isoelectric Point: 9.7515

>NTDB_id=768532 ORQ91_RS02665 WP_258011096.1 541202..541858(+) (comFC) [Bacillus safensis strain BS-10L]
MPAFTWKSFLLLNDDRLCIACKNHLVKIERPICPTCGRAQSNDQLCEDCNRWNERSDSIKILVKNRSVYTYNELMKDVLA
RFKFRGDTALAELFQKDVQAAFKHSFCIKDPLLIPIPLSYERLKERGFNQSVIIASLLDKPILQPLVKIHQSKQSKKKKN
ERLDQKGLFQIKQTDAIVQRDIILVDDIYTTGATIYDAARILKDAGAKSVSSFTLIRS

Nucleotide


Download         Length: 657 bp        

>NTDB_id=768532 ORQ91_RS02665 WP_258011096.1 541202..541858(+) (comFC) [Bacillus safensis strain BS-10L]
GTGCCTGCTTTTACATGGAAATCATTCCTACTATTAAATGATGATCGCCTTTGTATAGCATGTAAGAATCACCTAGTAAA
GATTGAGCGTCCTATTTGTCCAACATGCGGAAGGGCGCAGTCAAATGACCAATTGTGCGAGGACTGTAACAGATGGAATG
AACGCTCTGATTCTATTAAAATCCTTGTAAAAAATAGGTCAGTTTATACTTACAACGAGTTGATGAAAGATGTCCTTGCC
CGCTTTAAATTTCGGGGTGATACGGCTTTAGCTGAGCTGTTTCAAAAAGATGTACAAGCAGCATTTAAACATTCCTTCTG
CATAAAAGACCCATTGCTGATACCGATTCCTTTAAGTTATGAAAGACTAAAAGAAAGAGGATTTAATCAGTCCGTGATAA
TCGCTTCTTTGCTAGATAAGCCAATATTGCAGCCACTCGTGAAAATACATCAAAGTAAGCAGTCTAAAAAAAAGAAAAAT
GAACGCCTAGATCAAAAAGGATTGTTTCAAATAAAGCAAACAGATGCGATTGTTCAAAGGGATATTATATTAGTTGATGA
TATCTATACAACGGGAGCAACCATCTATGATGCGGCAAGAATTTTGAAAGACGCAGGTGCTAAAAGTGTTTCTTCTTTTA
CGTTGATACGTAGTTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-49)

Phosphoribosyl transferase domain (Pribosyltran)

(127-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

49.537

99.083

0.491