Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ORQ91_RS02645 Genome accession   NZ_CP115172
Coordinates   537568..538257 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain BS-10L     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 532568..543257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORQ91_RS02625 (ORQ91_00530) - 533260..534327 (+) 1068 WP_024423627.1 glycosyltransferase family 4 protein -
  ORQ91_RS02630 (ORQ91_00531) - 534363..535454 (-) 1092 WP_034623744.1 LCP family protein -
  ORQ91_RS02635 (ORQ91_00532) - 535439..536107 (-) 669 WP_012011434.1 YigZ family protein -
  ORQ91_RS02640 (ORQ91_00533) degS 536328..537503 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  ORQ91_RS02645 (ORQ91_00534) degU 537568..538257 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ORQ91_RS02650 (ORQ91_00535) - 538473..539315 (+) 843 WP_024423625.1 DegV family protein -
  ORQ91_RS02655 (ORQ91_00536) comFA 539436..540833 (+) 1398 WP_142927723.1 DEAD/DEAH box helicase Machinery gene
  ORQ91_RS02660 (ORQ91_00537) - 540882..541175 (+) 294 WP_024423623.1 late competence development ComFB family protein -
  ORQ91_RS02665 (ORQ91_00538) comFC 541202..541858 (+) 657 WP_258011096.1 ComF family protein Machinery gene
  ORQ91_RS02670 (ORQ91_00539) - 541915..542334 (+) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  ORQ91_RS02675 (ORQ91_00540) flgM 542414..542677 (+) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  ORQ91_RS02680 (ORQ91_00541) - 542696..543178 (+) 483 WP_103131678.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=768530 ORQ91_RS02645 WP_008348273.1 537568..538257(+) (degU) [Bacillus safensis strain BS-10L]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=768530 ORQ91_RS02645 WP_008348273.1 537568..538257(+) (degU) [Bacillus safensis strain BS-10L]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGCTAAAAGA
AATGGATGCAGACACACTTATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ATTTAGTAAATGAATTCCGACGCTTGGCAACTAGCGGCGTTTCAGCACATCCACAGCATGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTTAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996