Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   QPX65_RS10720 Genome accession   NZ_CP126698
Coordinates   2219062..2221215 (-) Length   717 a.a.
NCBI ID   WP_285453973.1    Uniprot ID   -
Organism   Vibrio vulnificus strain VV2018     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2214062..2226215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX65_RS10695 (QPX65_10695) - 2214396..2215184 (-) 789 WP_285453967.1 GGDEF domain-containing protein -
  QPX65_RS10700 (QPX65_10700) kdsB 2215356..2216111 (-) 756 WP_285453969.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QPX65_RS10705 (QPX65_10705) - 2216111..2216290 (-) 180 WP_011079973.1 Trm112 family protein -
  QPX65_RS10710 (QPX65_10710) lpxK 2216271..2217278 (-) 1008 WP_011150832.1 tetraacyldisaccharide 4'-kinase -
  QPX65_RS10715 (QPX65_10715) msbA 2217278..2219029 (-) 1752 WP_043877274.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  QPX65_RS10720 (QPX65_10720) comEC 2219062..2221215 (-) 2154 WP_285453973.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QPX65_RS10725 (QPX65_10725) - 2221320..2221829 (+) 510 WP_011079969.1 DUF2062 domain-containing protein -
  QPX65_RS10730 (QPX65_10730) lolE 2222025..2223269 (-) 1245 WP_039469650.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  QPX65_RS10735 (QPX65_10735) lolD 2223281..2223964 (-) 684 WP_011079967.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  QPX65_RS10740 (QPX65_10740) lolC 2223957..2225162 (-) 1206 WP_085761225.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  QPX65_RS10745 (QPX65_10745) - 2225426..2225995 (+) 570 WP_045596678.1 hypothetical protein -

Sequence

Protein


Download         Length: 717 a.a.        Molecular weight: 80451.06 Da        Isoelectric Point: 9.0256

>NTDB_id=768431 QPX65_RS10720 WP_285453973.1 2219062..2221215(-) (comEC) [Vibrio vulnificus strain VV2018]
MLIVVAIFIIIVRKTCRYLLGVTIALLIAISAGNLMQWQVKTLFQAGENITINGAVDSPFKQISHGYEGVVSITAINNSR
LVWTLRPKVRLISPIPLGQGDQIVAHVTLKRVYGLLNEAGFDAERFAVSQGIVGRATIDDSRSWRLVSVKGGRQALIEKA
QQLLVRSDHTGYLLGLSFGLRDDITDEQWQQLKQSGLIHLLSISGLHIGMAFGIGYWLGHWLRFGRLTLVWLPLAIGLSL
SWSYAWLAGFTLPTQRAIVFVTLVALFSFTSGQVGRWTVLLLALAFCLAMSPFSALSTSLWLSFLAVSCVFLVVDLRESS
SSWIGKMKSVFCIQGMLLLYLAPVTAYFFSGLSLAGWLYNFLFIPWFSLVVVPVIFVALVLTALDMMPVASILWQLADLS
LWPLTYAMPYAHLGWWGLSSFQVVLVALCALAVMLRHVIRWQLSVVLVILLSTSSLLIHPLSRTRIDVLDVGHGLAVLIE
KDGKTLLYDTGKSWHGGSIAQQVIEPILLSRGSRSLDGVIISHQDDDHAGGLPYLQQNMRPQWVRSSHYLSDFPCVKGHD
FEWQGLKMTVLWPPRQVTRAYNPHSCVIRMEDEVNQFSFLMTGDIDALAEWILIRDPEQLNSNVVLVPHHGSQTSSIEPF
VNAVQADVAIASLAKGNQWGMPQPKVVETYRRHRMQWFDTGELGQITLYVEQRNWRIVSRRDTFNAWYRQMLRNQVE

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=768431 QPX65_RS10720 WP_285453973.1 2219062..2221215(-) (comEC) [Vibrio vulnificus strain VV2018]
ATGCTAATTGTTGTTGCCATCTTTATCATTATTGTGCGTAAAACGTGTCGTTACTTGCTGGGGGTGACCATCGCACTTTT
GATTGCCATTTCGGCTGGTAACCTTATGCAATGGCAAGTAAAGACCCTATTTCAGGCAGGGGAGAATATTACCATAAATG
GCGCCGTTGACAGCCCTTTTAAGCAAATAAGTCACGGTTATGAAGGTGTTGTTAGCATCACAGCAATAAATAATAGTCGT
TTAGTGTGGACCCTGCGACCTAAAGTGCGTTTGATCTCACCCATTCCTCTTGGGCAGGGGGATCAAATCGTAGCGCATGT
TACTCTAAAACGAGTCTATGGGTTACTCAATGAAGCAGGGTTTGATGCCGAACGTTTTGCTGTCAGCCAAGGCATCGTTG
GACGGGCAACTATTGATGATTCTCGCTCTTGGCGTTTGGTCTCCGTGAAGGGAGGGCGACAAGCGCTGATCGAAAAAGCT
CAGCAGCTACTGGTTCGTAGCGATCATACCGGTTATTTACTTGGCTTAAGCTTTGGTCTTCGCGACGACATTACCGACGA
GCAATGGCAGCAACTCAAGCAAAGTGGTTTGATACATCTACTTTCGATCTCAGGGCTGCACATTGGTATGGCTTTTGGTA
TCGGTTACTGGCTCGGGCATTGGTTGCGTTTTGGACGGCTTACTCTTGTTTGGCTGCCGTTGGCTATTGGACTGAGTCTC
AGTTGGAGTTATGCGTGGCTGGCTGGTTTTACTCTGCCAACGCAAAGAGCCATTGTCTTTGTCACGTTAGTCGCCTTGTT
CTCGTTTACGTCGGGGCAAGTCGGTCGCTGGACAGTCTTGCTATTGGCTCTGGCCTTCTGTCTTGCGATGTCGCCATTTT
CTGCCCTTTCTACCAGTCTCTGGCTCTCGTTTCTTGCTGTCAGTTGCGTCTTTCTGGTGGTTGATCTCCGTGAGTCGTCT
TCATCTTGGATTGGCAAAATGAAAAGCGTATTTTGCATCCAAGGTATGCTGCTGCTTTATCTCGCACCTGTGACTGCTTA
CTTCTTTTCCGGTTTGAGTTTAGCCGGCTGGCTGTACAACTTCCTGTTTATCCCCTGGTTTAGTTTGGTGGTGGTGCCTG
TTATCTTTGTTGCACTCGTGCTGACTGCGCTGGATATGATGCCTGTAGCCAGTATCCTATGGCAGTTAGCGGATTTAAGT
TTATGGCCATTAACTTACGCTATGCCTTACGCCCATTTAGGTTGGTGGGGGCTGTCTTCTTTTCAGGTGGTGTTGGTCGC
GTTGTGCGCGCTCGCTGTGATGCTGAGACATGTTATTCGCTGGCAACTCTCTGTCGTTCTGGTCATTTTGCTCAGCACTT
CTTCACTGTTGATTCATCCTCTTTCTCGCACCCGAATTGACGTTTTAGATGTTGGCCATGGGCTCGCCGTATTGATTGAG
AAAGACGGTAAAACGCTGCTTTATGACACGGGAAAGTCTTGGCATGGTGGCAGTATTGCACAGCAAGTGATTGAGCCTAT
TTTATTGAGTCGGGGTAGTAGAAGCCTTGATGGGGTGATCATCAGCCATCAAGATGACGATCATGCAGGAGGCTTGCCCT
ATTTGCAGCAAAACATGCGCCCACAATGGGTAAGGAGTAGTCATTACTTGAGTGATTTTCCGTGTGTTAAAGGTCACGAC
TTTGAGTGGCAAGGGCTCAAAATGACCGTGCTTTGGCCGCCAAGGCAAGTGACTCGTGCCTACAATCCCCACTCCTGTGT
GATTCGTATGGAGGATGAGGTAAATCAGTTTTCATTTTTGATGACTGGTGATATTGACGCTTTGGCTGAGTGGATTCTGA
TTCGTGATCCTGAACAGCTAAACAGCAATGTGGTATTGGTGCCGCATCATGGCAGTCAAACTTCGTCGATTGAGCCTTTT
GTGAACGCCGTCCAGGCAGATGTGGCAATCGCCTCGTTGGCAAAAGGAAATCAGTGGGGGATGCCACAACCGAAAGTGGT
CGAGACTTATCGACGACATCGCATGCAGTGGTTTGATACTGGTGAGCTGGGTCAGATAACGTTGTATGTGGAACAGAGAA
ACTGGCGAATCGTCTCAAGACGCGACACTTTCAACGCTTGGTATAGGCAGATGCTGCGTAACCAAGTAGAATAG

Domains

Predicted by InterProScan.

Competence protein (Competence)

(176-436)

Metallo-beta-lactamase superfamily (Lactamase_B)

(471-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

44.737

100

0.45
  comEC Vibrio parahaemolyticus RIMD 2210633

45.726

97.908

0.448
  comEC Vibrio cholerae strain A1552

43.232

100

0.437