Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   O1A01_RS25240 Genome accession   NZ_CP115153
Coordinates   4922586..4923110 (-) Length   174 a.a.
NCBI ID   WP_066417486.1    Uniprot ID   -
Organism   Sutcliffiella sp. NC1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4917586..4928110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1A01_RS25215 (O1A01_25215) - 4918419..4918700 (-) 282 WP_270065341.1 hypothetical protein -
  O1A01_RS25220 (O1A01_25220) - 4918933..4919826 (-) 894 WP_270066468.1 SEC-C metal-binding domain-containing protein -
  O1A01_RS25225 (O1A01_25225) - 4919798..4921180 (-) 1383 WP_270065342.1 hypothetical protein -
  O1A01_RS25230 (O1A01_25230) - 4921334..4921594 (-) 261 WP_270065343.1 hypothetical protein -
  O1A01_RS25235 (O1A01_25235) rpsR 4921916..4922152 (-) 237 WP_066417506.1 30S ribosomal protein S18 -
  O1A01_RS25240 (O1A01_25240) ssbA 4922586..4923110 (-) 525 WP_066417486.1 single-stranded DNA-binding protein Machinery gene
  O1A01_RS25245 (O1A01_25245) rpsF 4923156..4923443 (-) 288 WP_066417483.1 30S ribosomal protein S6 -
  O1A01_RS25250 (O1A01_25250) ychF 4923560..4924660 (-) 1101 WP_066417481.1 redox-regulated ATPase YchF -
  O1A01_RS25255 (O1A01_25255) - 4924894..4925091 (-) 198 WP_270065344.1 DUF951 domain-containing protein -
  O1A01_RS25260 (O1A01_25260) - 4925219..4926232 (-) 1014 WP_066417478.1 hypothetical protein -
  O1A01_RS25265 (O1A01_25265) yyaC 4926458..4927081 (+) 624 WP_066417476.1 spore protease YyaC -
  O1A01_RS25270 (O1A01_25270) - 4927172..4927894 (-) 723 WP_066417460.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19218.94 Da        Isoelectric Point: 4.8249

>NTDB_id=768377 O1A01_RS25240 WP_066417486.1 4922586..4923110(-) (ssbA) [Sutcliffiella sp. NC1]
MLNRVVLVGRLTKDPELRYTASGVAVATFTLAVNRAFQNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRMQTR
NYEGQDGRRVYVTEVVAESVQFLEPRNASGGGGSRPNFNENQGYGSSPFGNDQNHDQRGGSNNNNRNQGFTRLDDDPFAN
EGQTIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=768377 O1A01_RS25240 WP_066417486.1 4922586..4923110(-) (ssbA) [Sutcliffiella sp. NC1]
ATGTTAAATCGCGTTGTTTTAGTAGGTCGTCTTACGAAAGACCCTGAATTACGCTATACTGCAAGTGGAGTAGCTGTAGC
TACATTTACGTTAGCAGTTAATAGAGCTTTTCAAAACCAACAAGGTGAAAGAGAAGCAGATTTTATTAACTGTGTTGTAT
GGAGAAAACCAGCTGAGAATGTTGCCAACTTCTTGAAAAAAGGAAGTTTAGCAGGAGTAGATGGTCGTATGCAAACACGT
AATTATGAAGGTCAAGATGGACGTCGTGTATACGTAACAGAAGTAGTAGCGGAAAGTGTTCAATTCCTTGAACCACGAAA
TGCTTCTGGCGGCGGTGGAAGTCGCCCTAATTTCAATGAAAATCAAGGGTACGGTTCTTCTCCATTTGGAAATGATCAGA
ACCATGACCAACGAGGCGGTTCTAATAATAACAACCGCAATCAAGGCTTTACACGTCTTGATGATGACCCGTTCGCAAAT
GAGGGACAAACAATAGATATATCTGATGACGATTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.403

100

0.701
  ssb Latilactobacillus sakei subsp. sakei 23K

59.777

100

0.615
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

60.92

0.379