Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   O6P33_RS11610 Genome accession   NZ_CP114976
Coordinates   2489907..2491298 (+) Length   463 a.a.
NCBI ID   WP_269817935.1    Uniprot ID   -
Organism   Denitrificimonas caeni strain CE14     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2484907..2496298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6P33_RS11590 (O6P33_11590) xseA 2485270..2486631 (+) 1362 WP_269817932.1 exodeoxyribonuclease VII large subunit -
  O6P33_RS11595 (O6P33_11595) - 2486744..2487985 (+) 1242 WP_420094996.1 mechanosensitive ion channel family protein -
  O6P33_RS11600 (O6P33_11600) - 2488085..2488315 (+) 231 WP_269817933.1 PP0621 family protein -
  O6P33_RS11605 (O6P33_11605) pilS 2488308..2489903 (+) 1596 WP_269817934.1 two-component system sensor histidine kinase NtrB Regulator
  O6P33_RS11610 (O6P33_11610) pilR 2489907..2491298 (+) 1392 WP_269817935.1 sigma-54-dependent transcriptional regulator Regulator
  O6P33_RS11615 (O6P33_11615) - 2491340..2491777 (+) 438 WP_269817936.1 hypothetical protein -
  O6P33_RS11620 (O6P33_11620) - 2491811..2492233 (+) 423 WP_269817937.1 META domain-containing protein -
  O6P33_RS11625 (O6P33_11625) - 2492336..2493625 (+) 1290 WP_269817938.1 M18 family aminopeptidase -
  O6P33_RS11630 (O6P33_11630) glyA 2493694..2494947 (-) 1254 WP_269817939.1 serine hydroxymethyltransferase -
  O6P33_RS11635 (O6P33_11635) - 2495324..2495500 (-) 177 WP_269817940.1 hypothetical protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 51403.77 Da        Isoelectric Point: 6.5083

>NTDB_id=767657 O6P33_RS11610 WP_269817935.1 2489907..2491298(+) (pilR) [Denitrificimonas caeni strain CE14]
MSQQTALIIDDEPDIRELLEITLGRMNLHTRSACNVKEAYQWLERESFDLCLTDMRLPDGTGLDIIKFVQKNHSQTPIAM
ITAYGCVDTATQALKAGAFDFITKPVDLVRLRELVSSALRLRKEPTAPAPVTEGPLLGSSLPMQKLRSQIAKLARSQAPV
YISGESGSGKELVARQIHQQGGRAQQPFIPVNCGAIPAELMESEFFGHKKGSFSGATEDKPGLFQAAHGGTLFLDEVADL
PLAMQVKLLRALQEKAIRPVGSQQEQLVDVRILSATHKNLAHEVAAERFRQDLYYRLNVIELLVPPLRERPEDIEQLSNS
ILARLSADGLPVRLHPDALAKLQGYIFSGNVRELENILERAYTLAEGEFIHPHDLKTNHMPSAAPQPTVAAKAQAAPQHA
SSNDLSQHALESIDNLEEHLEEVERKLITQALEETRWNRTAAAERLGLTFRSLRYRLKKLGID

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=767657 O6P33_RS11610 WP_269817935.1 2489907..2491298(+) (pilR) [Denitrificimonas caeni strain CE14]
ATGAGTCAACAAACAGCCCTAATCATTGATGACGAACCTGATATTCGTGAGCTTTTGGAGATCACTCTTGGCCGCATGAA
CCTGCACACCCGCAGCGCTTGCAATGTCAAAGAGGCTTACCAATGGCTCGAACGTGAATCTTTCGATCTTTGTTTAACGG
ACATGCGCTTACCAGACGGCACGGGTCTAGACATCATTAAGTTTGTGCAAAAAAACCACAGCCAAACGCCCATTGCCATG
ATCACCGCTTACGGTTGCGTGGACACGGCCACCCAAGCTTTAAAAGCCGGAGCCTTTGATTTTATTACCAAGCCTGTGGA
CCTTGTGCGTTTACGGGAACTGGTCAGCAGCGCCTTGCGTTTGCGCAAAGAACCTACCGCGCCAGCGCCAGTGACTGAAG
GCCCACTCTTAGGCAGTTCGTTACCGATGCAAAAACTGCGCAGCCAAATTGCTAAACTGGCCCGCAGCCAAGCCCCGGTC
TACATCAGCGGTGAGTCAGGCAGTGGTAAAGAGTTGGTCGCACGGCAAATCCACCAGCAAGGTGGGCGCGCACAACAGCC
CTTTATTCCAGTCAACTGCGGTGCGATTCCTGCAGAACTGATGGAAAGTGAATTTTTTGGCCATAAAAAAGGCAGTTTTA
GTGGTGCCACAGAGGATAAACCGGGGTTATTTCAAGCTGCCCATGGCGGGACTTTGTTTCTCGATGAAGTGGCGGACTTG
CCCTTGGCCATGCAAGTTAAATTGCTGCGCGCTTTACAAGAAAAAGCCATTCGCCCTGTGGGCAGTCAGCAAGAGCAATT
GGTTGATGTACGCATTTTAAGCGCCACCCATAAAAACCTTGCCCATGAAGTTGCTGCCGAGCGTTTTCGTCAAGACTTAT
ACTACCGCCTCAATGTGATTGAGCTGTTAGTACCGCCGCTGCGTGAGCGTCCAGAAGACATTGAGCAACTGAGCAATTCT
ATTTTAGCGCGCTTAAGTGCCGATGGTTTACCCGTGCGCCTACACCCAGATGCCTTAGCCAAACTGCAAGGCTATATTTT
TTCCGGCAACGTGCGTGAACTGGAAAATATTTTGGAGCGGGCCTACACCTTAGCTGAGGGTGAGTTTATTCATCCCCATG
ATTTAAAAACCAACCACATGCCCAGCGCGGCACCGCAACCAACAGTCGCAGCAAAAGCGCAAGCAGCCCCACAGCACGCC
TCTAGTAACGACCTTAGCCAGCACGCTCTGGAAAGCATCGATAACCTTGAAGAGCACTTAGAAGAGGTTGAGCGCAAACT
GATCACTCAAGCCCTTGAAGAAACCCGCTGGAACCGCACAGCTGCAGCAGAGCGTCTGGGCCTAACCTTCCGTTCATTGC
GCTACCGTTTAAAAAAGCTGGGCATTGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

70.753

100

0.711
  pilR Acinetobacter baumannii strain A118

50

100

0.508