Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   O6P33_RS11605 Genome accession   NZ_CP114976
Coordinates   2488308..2489903 (+) Length   531 a.a.
NCBI ID   WP_269817934.1    Uniprot ID   A0AAE9VUB2
Organism   Denitrificimonas caeni strain CE14     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2483308..2494903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6P33_RS11580 (O6P33_11580) tsf 2483318..2484190 (-) 873 WP_269817930.1 translation elongation factor Ts -
  O6P33_RS11585 (O6P33_11585) rpsB 2484302..2485030 (-) 729 WP_269817931.1 30S ribosomal protein S2 -
  O6P33_RS11590 (O6P33_11590) xseA 2485270..2486631 (+) 1362 WP_269817932.1 exodeoxyribonuclease VII large subunit -
  O6P33_RS11595 (O6P33_11595) - 2486744..2487985 (+) 1242 WP_420094996.1 mechanosensitive ion channel family protein -
  O6P33_RS11600 (O6P33_11600) - 2488085..2488315 (+) 231 WP_269817933.1 PP0621 family protein -
  O6P33_RS11605 (O6P33_11605) pilS 2488308..2489903 (+) 1596 WP_269817934.1 two-component system sensor histidine kinase NtrB Regulator
  O6P33_RS11610 (O6P33_11610) pilR 2489907..2491298 (+) 1392 WP_269817935.1 sigma-54-dependent transcriptional regulator Regulator
  O6P33_RS11615 (O6P33_11615) - 2491340..2491777 (+) 438 WP_269817936.1 hypothetical protein -
  O6P33_RS11620 (O6P33_11620) - 2491811..2492233 (+) 423 WP_269817937.1 META domain-containing protein -
  O6P33_RS11625 (O6P33_11625) - 2492336..2493625 (+) 1290 WP_269817938.1 M18 family aminopeptidase -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 59006.65 Da        Isoelectric Point: 7.7122

>NTDB_id=767656 O6P33_RS11605 WP_269817934.1 2488308..2489903(+) (pilS) [Denitrificimonas caeni strain CE14]
MTKQLLAVSGQQGQRILRLYHLYRLLIGFALVLLSSSDVDGHLLDLAHAQLFKYGSWTYLTVNIIATASMHRSDRLLPVF
ALALYDVAQLSLLFYAAGGTPSGIGNLIIVAVAVANILLRGRIGFLIAAVAAAGIIYLTFYLSLSNPAASNQFMQAGILG
SLCFAAAFFVQSLSRRLRASEYLAEQRAGDVANLEELNAVVIERMRTGIIVLDADHRVLQVNQSALTLMGLEKLLGRILD
PHFPALITAFEQWQNNPSLRTSPFESALSGTQIQASFVRLQHNDNLQILIFLEDNSQLNQHAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLHESPALDNADRRLAQIIQDQSRRMNTVIENVLQLSRQRDAEPQLLDLKYWLHRFASEFREQAPAN
KTLHLSTKGRGLKTRMDPHQLDQVLMNLVENGMRYSSKNHAQSQVWLLLYRHPQTDLPTLEVQDDGPGVELGDQHSLFEP
FFTTENKGTGLGLYISRELCESNQARLDYSPRADGGSCFRITFAHPHKLSA

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=767656 O6P33_RS11605 WP_269817934.1 2488308..2489903(+) (pilS) [Denitrificimonas caeni strain CE14]
GTGACTAAACAGCTCCTTGCTGTATCAGGACAGCAAGGGCAGCGTATTCTGCGGCTCTACCACCTCTACCGCCTCCTGAT
CGGCTTTGCCTTAGTTTTGCTCAGCTCGAGCGATGTGGATGGCCACTTACTCGACCTTGCTCACGCTCAGCTGTTTAAGT
ATGGCAGTTGGACTTATCTGACGGTCAATATCATTGCTACTGCCAGCATGCACCGCAGCGACCGTTTGCTGCCGGTATTT
GCTTTAGCCTTATATGATGTGGCGCAGCTGAGTTTATTGTTTTACGCCGCCGGCGGCACTCCCAGCGGGATTGGCAATTT
AATTATTGTCGCCGTGGCCGTGGCCAATATTCTACTGCGTGGACGCATTGGCTTTTTAATTGCTGCCGTAGCTGCTGCAG
GTATTATTTACCTGACCTTTTATTTGAGCCTGTCTAACCCAGCCGCCAGCAATCAATTTATGCAGGCCGGTATTTTGGGC
TCGCTGTGTTTTGCTGCAGCGTTCTTTGTGCAGAGTCTCAGCCGCCGTTTGCGCGCCAGTGAGTACCTTGCCGAGCAGCG
CGCTGGTGATGTAGCGAACCTAGAAGAACTCAACGCTGTGGTGATTGAGCGGATGCGCACCGGCATTATTGTCTTAGATG
CCGACCACCGCGTCTTACAGGTCAACCAATCAGCGCTGACCTTAATGGGCTTGGAAAAACTCCTCGGCCGCATTCTCGAT
CCGCACTTCCCAGCCCTTATTACTGCTTTCGAGCAATGGCAAAACAACCCATCGCTGCGCACCAGCCCCTTTGAGTCGGC
ACTCAGCGGCACCCAAATACAAGCCAGCTTTGTCAGACTGCAGCACAATGACAACTTACAAATTTTGATTTTCTTAGAAG
ACAACTCCCAGCTCAATCAACACGCCCAGCAGCTTAAACTTGCCTCATTAGGCCGTTTAACCGCCGGTATTGCCCACGAG
ATTCGCAACCCTCTGGGCGCTATTAGCCATGCGGCGCAACTGCTGCATGAGTCCCCGGCACTGGACAACGCAGACCGGCG
CTTAGCACAAATTATTCAAGATCAATCGCGGCGCATGAATACCGTGATTGAAAACGTCCTGCAGCTGTCTCGACAGCGTG
ATGCCGAGCCACAACTGCTGGATTTAAAATATTGGCTGCACCGTTTTGCCAGCGAATTTCGAGAGCAAGCACCAGCCAAT
AAAACCCTGCATCTGAGCACCAAGGGGCGCGGTTTAAAAACCCGCATGGACCCGCACCAACTGGATCAAGTACTGATGAA
TCTGGTGGAGAACGGCATGCGCTACAGCAGTAAAAACCATGCACAAAGTCAGGTTTGGTTGCTGCTCTACCGCCACCCGC
AAACCGACTTACCGACTTTGGAAGTGCAAGATGATGGCCCCGGCGTTGAACTAGGCGACCAGCACAGCCTCTTCGAGCCT
TTTTTCACTACGGAAAACAAAGGCACGGGGCTTGGCTTGTATATTTCCCGAGAGCTCTGTGAAAGCAACCAAGCCCGTTT
AGACTACAGCCCCCGTGCCGACGGCGGCAGCTGCTTTAGAATCACCTTTGCACACCCGCACAAATTGAGCGCATAA

Domains

Predicted by InterproScan.

PAS domain (PAS_8)

(201-253)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.566

99.812

0.605