Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   F0313_RS10245 Genome accession   NZ_CP126600
Coordinates   2117707..2118147 (+) Length   146 a.a.
NCBI ID   WP_000360895.1    Uniprot ID   B7LFX5
Organism   Escherichia coli strain Ec1119     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2112707..2123147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0313_RS10225 (F0313_010205) aroP 2113705..2115078 (+) 1374 WP_000969915.1 aromatic amino acid transporter AroP -
  F0313_RS10230 (F0313_010210) ampE 2115121..2115975 (-) 855 WP_000172005.1 beta-lactamase regulator AmpE -
  F0313_RS10235 (F0313_010215) ampD 2115972..2116523 (-) 552 WP_000923721.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  F0313_RS10240 (F0313_010220) nadC 2116611..2117504 (+) 894 WP_001135174.1 carboxylating nicotinate-nucleotide diphosphorylase -
  F0313_RS10245 (F0313_010225) pilA 2117707..2118147 (+) 441 WP_000360895.1 prepilin peptidase-dependent pilin Machinery gene
  F0313_RS10250 (F0313_010230) pilB 2118157..2119542 (+) 1386 WP_001025173.1 type II secretion system protein GspE Machinery gene
  F0313_RS10255 (F0313_010235) hofC 2119532..2120734 (+) 1203 WP_000157234.1 protein transport protein HofC -
  F0313_RS10260 (F0313_010240) guaC 2120769..2121812 (-) 1044 WP_001217338.1 GMP reductase -
  F0313_RS10265 (F0313_010245) - 2121968..2122012 (-) 45 WP_120795372.1 protein YacM -
  F0313_RS10270 (F0313_010250) coaE 2122037..2122657 (+) 621 WP_001269520.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15602.71 Da        Isoelectric Point: 4.3927

>NTDB_id=767656 F0313_RS10245 WP_000360895.1 2117707..2118147(+) (pilA) [Escherichia coli strain Ec1119]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTH
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=767656 F0313_RS10245 WP_000360895.1 2117707..2118147(+) (pilA) [Escherichia coli strain Ec1119]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCAC
TATGTTTCAGCCATGAGTGTGGCAAAAGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGACTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LFX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

43.089

84.247

0.363